Miyakogusa Predicted Gene
- Lj5g3v0240210.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MY43_SOYBN |
848 |
92.5 |
95.8 |
(tr|I1MY43) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G75850.1 |
743 |
78.3 |
87.8 |
| Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790 |
| Medicago |
Medtr1g025610.2 |
828 |
90.7 |
94.2 |
| vacuolar protein sorting-associated 35A-like protein | HC | chr1:8204815-8194669 | 20130731 |
| Soybean |
Glyma17g37870.1 |
847 |
92.3 |
95.8 |
|
| LJGI |
gnl|LJGI|TC70642 |
1344 |
99.3 |
99.3 |
similar to UniRef100_A7NSS5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0240210.1 |
length: 452 aa. |
| IPR005378 |
Vacuolar protein sorting-associated protein 35 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR11099 |
VACUOLAR |
2.5e-184 |
1-452 |
| HMMPfam |
PF03635 |
Vps35 |
1.8e-136 |
1-410 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
132-139 |
- Wolf-PSORT
Lj5g3v0240210.1 chlo 3, nucl 2.5, vacu 2, golg 2, cyto_nucl 2, plas 1, extr 1, E.R. 1, pero 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0240210.1 |
|