Miyakogusa Predicted Gene

Lj4g3v2678610.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I783_MEDTR 763 79.0 88.6 (tr|G7I783) Pentatricopeptide repeat protein OS=Medicago truncatula GN=MTR_1g045880 PE=4 SV=1
TAIR_pep AT2G32630.1 509 52.4 73.5 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=624
Medicago Medtr1g045880.1 768 79.0 88.6 | PPR containing plant-like protein | HC | chr1:17272396-17266667 | 20130731
Soybean Glyma20g20910.1 627 68.3 78.6  
LJGI gnl|LJGI|BW599171 882 98.3 98.3 weakly similar to UniRef100_A7PT63 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2678610.1 length: 473 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 3.8e-06 37-61
140-169
HMMPfam PF12854 PPR_1 7e-08 378-409
HMMPfam PF13041 PPR_2 1.1e-10 71-113
172-220
242-290
311-360
417-462
HMMTigr TIGR00756 PPR: 3.8e-10 71-99
104-137
140-173
174-208
209-242
244-278
279-313
314-347
349-383
384-417
420-452
ProfileScan PS51375 PPR 9.964 1-29
66-100
30-64
102-136
137-171
172-206
207-241
242-276
277-311
312-346
347-381
417-451
382-416
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9.5e-07 414-446
no_ID  
HMMPanther PTHR24015 FAMILY 1e-133 1-465
HMMPanther PTHR24015:SF0 SUBFAMILY 1e-133 1-465
superfamily SSF81901 HCP-like 6.9e-06 34-310
Wolf-PSORT
Lj4g3v2678610.1	chlo 7.5, cyto 6, chlo_mito 4.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2678610.1