Miyakogusa Predicted Gene

Lj4g3v2678610.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2678610.1 tr|D7MJJ2|D7MJJ2_ARALL EMB2745 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_916332 PE=4
SV=1,25.5,2e-18,HCP-like,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; no description,Tetratr,CUFF.51440.1
         (1423 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW599171 weakly similar to UniRef100_A7PT63 Cluster: Ch...   882   0.0  

>gnl|LJGI|BW599171 weakly similar to UniRef100_A7PT63 Cluster: Chromosome chr8
            scaffold_29, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (24%)
          Length = 488

 Score =  882 bits (445), Expect = 0.0
 Identities = 469/477 (98%)
 Strand = Plus / Plus

                                                                        
Query: 773  tgatagatgaagctttgagactgcaagatatcatggaaaggaaaggatttgaagcggatg 832
            ||||| ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 12   tgatatatgaaactttgagactggacgatatcatggaatggaaaggatttgaagcggatg 71

                                                                        
Query: 833  tatttacatacaacattcttgctagtgggctctgtgatttgcataggtatgaggaagcca 892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72   tatttacatacaacattcttgctagtgggctctgtgatttgcataggtatgaggaagcca 131

                                                                        
Query: 893  agaggacattgaatacaatgatagagaagggtttggctccaaatgttgtgtctttcacta 952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132  agaggacattgaatacaatgatagagaagggtttggctccaaatgttgtgtctttcacta 191

                                                                        
Query: 953  tatttattgagatatgttgtaaagaaggaaaccttgcagaagctgagaggttctttaggg 1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192  tatttattgagatatgttgtaaagaaggaaaccttgcagaagctgagaggttctttaggg 251

                                                                        
Query: 1013 acatggagaagaggggagatgtgcctaatattattacatataatactctaatagatgcat 1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252  acatggagaagaggggagatgtgcctaatattattacatataatactctaatagatgcat 311

                                                                        
Query: 1073 atagcaagaacgaaaaagttaagcaagctcgtatgttaaaatctgaaatggtagcgacgg 1132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312  atagcaagaacgaaaaagttaagcaagctcgtatgttaaaatctgaaatggtagcgacgg 371

                                                                        
Query: 1133 gattacagccagatgtatatacatacacatcactaatactaggggactgtattgttggca 1192
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 372  gattacagccagatgtatatacatacacatcactaatactaggggaatgtattgttggca 431

                                                                     
Query: 1193 gggtagttgagtcattgaaagttttcgatgaaatgttgttaaagggcataactggaa 1249
            |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432  gggtagatgaggcattgaaagttttcgatgaaatgttgttaaagggcataactggaa 488