Miyakogusa Predicted Gene
- Lj4g3v2227920.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JR15_MEDTR |
250 |
74.4 |
80.5 |
(tr|G7JR15) ABC transporter B family member OS=Medicago truncatula GN=MTR_4g124040 PE=3 SV=1 |
| TAIR_pep |
AT1G02520.1 |
203 |
54.6 |
74.2 |
| Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278 |
| Medicago |
Medtr4g124040.1 |
250 |
74.4 |
80.5 |
| ABC transporter B family protein | HC | chr4:51195926-51203133 | 20130731 |
| Soybean |
Glyma13g17930.1 |
248 |
71.3 |
80.5 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2227920.1 |
length: 164 aa. |
| IPR001140 |
ABC transporter, transmembrane domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF00664 |
ABC_membrane |
5e-26 |
2-157 |
| IPR011527 |
ABC transporter, transmembrane domain, type 1 |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| superfamily |
SSF90123 |
ABC |
1.5e-25 |
1-157 |
| IPR017940 |
ABC transporter, integral membrane type 1 |
| ProfileScan |
PS50929 |
ABC_TM1F |
25.414 |
1-164 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1560.10 |
no description |
3.7e-24 |
7-145 |
| HMMPanther |
PTHR24222 |
FAMILY |
3.5e-89 |
1-164 |
| HMMPanther |
PTHR24222:SF3 |
SUBFAMILY |
3.5e-89 |
1-164 |
| Seg |
seg |
seg |
NA |
131-144 |
- Wolf-PSORT
Lj4g3v2227920.1 vacu 8, cyto 2, chlo 1, nucl 1, plas 1, E.R. 1, nucl_plas 1, cyto_pero 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2227920.1 |
|