Miyakogusa Predicted Gene

Lj4g3v0385780.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SAS7_LOTJA 276 96.6 96.6 (tr|I3SAS7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G22540.1 167 48.3 75.0 | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240

Medicago Medtr4g093970.1 266 68.5 78.9 | MADS-box transcription factor | HC | chr4:37172687-37162662 | 20130731

Soybean Glyma08g07260.3 275 72.7 80.5

LJGI gnl|LJGI|TC81268 1168 98.3 98.3 similar to UniRef100_Q6RF31 Cluster: MADS box transcription factor; n=1; Populus tomentosa|Rep: MADS box transcription factor - Populus tomentosa (Chinese white poplar), partial (46%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0385780.2 length: 207 aa.

IPR002100 Transcription factor, MADS-box

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0046983 protein dimerization activity

FPrintScan PR00404 MADSDOMAIN 6e-26 3-23
23-38
38-59

HMMPfam PF00319 SRF-TF 1.2e-24 9-59

HMMSmart SM00432 no description 3.7e-38 1-60

PatternScan PS00350 MADS_BOX_1 NA 3-57

ProfileScan PS50066 MADS_BOX_2 28.833 1-61

superfamily SSF55455 SRF-like 4.5e-29 2-96

IPR002487 Transcription factor, K-box

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF01486 K-box 3.8e-13 85-166

ProfileScan PS51297 K_BOX 12.699 84-179

no_ID

Coil coil coiled-coil NA 91-112
121-142
147-168

HMMPanther PTHR11945 MADS 6.1e-55 1-166

HMMPanther PTHR11945:SF19 MADS 6.1e-55 1-166

Seg seg seg NA 178-192

Wolf-PSORT

Lj4g3v0385780.2 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0385780.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SAS7_LOTJA	276	96.6	96.6	(tr\|I3SAS7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G22540.1	167	48.3	75.0	\| Symbols: SVP, AGL22 \| K-box region and MADS-box transcription factor family protein \| chr2:9580417-9583603 FORWARD LENGTH=240
Medicago	Medtr4g093970.1	266	68.5	78.9	\| MADS-box transcription factor \| HC \| chr4:37172687-37162662 \| 20130731
Soybean	Glyma08g07260.3	275	72.7	80.5
LJGI	gnl\|LJGI\|TC81268	1168	98.3	98.3	similar to UniRef100_Q6RF31 Cluster: MADS box transcription factor; n=1; Populus tomentosa\|Rep: MADS box transcription factor - Populus tomentosa (Chinese white poplar), partial (46%)

IPR002100	Transcription factor, MADS-box
Lj4g3v0385780.2				length: 207 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0046983	protein dimerization activity
FPrintScan	PR00404	MADSDOMAIN	6e-26	3-23 23-38 38-59
HMMPfam	PF00319	SRF-TF	1.2e-24	9-59
HMMSmart	SM00432	no description	3.7e-38	1-60
PatternScan	PS00350	MADS_BOX_1	NA	3-57
ProfileScan	PS50066	MADS_BOX_2	28.833	1-61
superfamily	SSF55455	SRF-like	4.5e-29	2-96
IPR002487	Transcription factor, K-box
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF01486	K-box	3.8e-13	85-166
ProfileScan	PS51297	K_BOX	12.699	84-179
no_ID
Coil	coil	coiled-coil	NA	91-112 121-142 147-168
HMMPanther	PTHR11945	MADS	6.1e-55	1-166
HMMPanther	PTHR11945:SF19	MADS	6.1e-55	1-166
Seg	seg	seg	NA	178-192