Miyakogusa Predicted Gene

Lj3g3v3026760.4

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LRA9_SOYBN 1805 80.2 84.7 (tr|I1LRA9) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT2G27900.2 1330 61.6 72.3 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124

Medicago Medtr4g056510.1 1746 78.4 82.5 | coiled-coil protein | HC | chr4:20718802-20736987 | 20130731

Soybean Glyma11g19670.1 1793 79.1 83.4

LJGI gnl|LJGI|TC69477 898 99.8 99.8 similar to UniRef100_A7PQN2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3026760.4 length: 1117 aa.

IPR003309 Transcription regulator SCAN

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

ProfileScan PS50804 SCAN_BOX 8.538 849-889

IPR019514 Protein of unknown function DUF2451, C-terminal

HMMPfam PF10474 DUF2451 1.4e-71 901-1115

IPR019515 Vacuolar protein sorting-associated protein 54

HMMPfam PF10475 DUF2450 7.6e-99 130-419

no_ID

HMMPanther PTHR13258 UNCHARACTERIZED 5.7e-278 47-1117

Seg seg seg NA 25-34
88-101
110-120
131-140
460-485
543-559
829-843
867-876

Wolf-PSORT

Lj3g3v3026760.4 nucl 10, chlo 2, vacu 1, cysk 1, chlo_mito 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3026760.4

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LRA9_SOYBN	1805	80.2	84.7	(tr\|I1LRA9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT2G27900.2	1330	61.6	72.3	\| Symbols: \| CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:11877654-11885238 FORWARD LENGTH=1124
Medicago	Medtr4g056510.1	1746	78.4	82.5	\| coiled-coil protein \| HC \| chr4:20718802-20736987 \| 20130731
Soybean	Glyma11g19670.1	1793	79.1	83.4
LJGI	gnl\|LJGI\|TC69477	898	99.8	99.8	similar to UniRef100_A7PQN2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

IPR003309	Transcription regulator SCAN
Lj3g3v3026760.4				length: 1117 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
ProfileScan	PS50804	SCAN_BOX	8.538	849-889
IPR019514	Protein of unknown function DUF2451, C-terminal
HMMPfam	PF10474	DUF2451	1.4e-71	901-1115
IPR019515	Vacuolar protein sorting-associated protein 54
HMMPfam	PF10475	DUF2450	7.6e-99	130-419
no_ID
HMMPanther	PTHR13258	UNCHARACTERIZED	5.7e-278	47-1117
Seg	seg	seg	NA	25-34 88-101 110-120 131-140 460-485 543-559 829-843 867-876