Miyakogusa Predicted Gene

Lj3g3v1906470.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M0N3_SOYBN 1783 85.5 91.3 (tr|I1M0N3) DNA-directed RNA polymerase (Fragment) OS=Glycine max PE=3 SV=2
TAIR_pep AT1G29940.1 1459 69.7 83.2 | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:10479322-10486670 REVERSE LENGTH=1178
Medicago Medtr4g124030.1 1645 78.6 88.1 | DNA-directed RNA polymerase | HC | chr4:51171803-51193467 | 20130731
Soybean Glyma13g26190.1 1782 85.5 91.3  
LJGI gnl|LJGI|TC67126 1705 99.0 99.0 similar to UniRef100_A7Q5C4 Cluster: DNA-directed RNA polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1906470.1 length: 994 aa.
IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:2.40.270.10 no description 1e-55 705-855
HMMPfam PF00562 RNA_pol_Rpb2_6 2.3e-114 508-877
IPR007121 RNA polymerase, beta subunit, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
PatternScan PS01166 RNA_POL_BETA NA 716-728
IPR007641 RNA polymerase Rpb2, domain 7
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04560 RNA_pol_Rpb2_7 4.4e-20 879-988
IPR007642 RNA polymerase Rpb2, domain 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04561 RNA_pol_Rpb2_2 3.2e-14 22-194
IPR007645 RNA polymerase Rpb2, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04565 RNA_pol_Rpb2_3 3.6e-24 278-342
IPR009674 RNA polymerase I, Rpa2 specific
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF06883 RNA_pol_Rpa2_4 7.4e-17 395-452
IPR014724 RNA polymerase Rpb2, OB-fold
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Gene3D G3DSA:2.40.50.150 no description 1.6e-06 596-677
IPR015712 DNA-directed RNA polymerase, subunit 2
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0032549 ribonucleoside binding    
HMMPanther PTHR20856 DNA-DIRECTED 0 1-990
no_ID  
Gene3D G3DSA:3.90.1100.10 no description 5.9e-44 504-580
HMMPanther PTHR20856:SF5 DNA-DIRECTED 0 1-990
Seg seg seg NA 872-882
superfamily SSF64484 beta 3e-267 8-990
Wolf-PSORT
Lj3g3v1906470.1	chlo 4, mito 3.5, nucl 3, cyto_mito 2.5, cysk_nucl 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1906470.1