Miyakogusa Predicted Gene

Lj3g3v0462200.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JKP9_MEDTR 239 62.0 70.9 (tr|G7JKP9) RING finger family protein OS=Medicago truncatula GN=MTR_4g030070 PE=4 SV=1
TAIR_pep AT4G10150.1 154 43.9 59.8 | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236
Medicago Medtr4g030070.1 239 62.0 70.9 | zinc finger, C3HC4 type (RING finger) protein | HC | chr4:10364008-10366917 | 20130731
Soybean Glyma09g00380.1 228 58.1 65.4  
LJGI gnl|LJGI|TC75381 478 100.0 100.0 similar to UniRef100_A7Q7T5 Cluster: Chromosome chr18 scaffold_61, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_61, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0462200.1 length: 275 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 3.2e-14 144-187
HMMSmart SM00184 Ring 6.6e-06 145-186
ProfileScan PS50089 ZF_RING_2 12.593 145-187
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.8e-17 141-190
no_ID  
HMMPanther PTHR22765 RING 8.6e-56 45-212
HMMPanther PTHR22765:SF23 PROTEIN 8.6e-56 45-212
Seg seg seg NA 18-26
30-54
66-86
superfamily SSF57850 RING/U-box 1.8e-20 119-193
Wolf-PSORT
Lj3g3v0462200.1	chlo 6, nucl 2, cyto 2, extr 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0462200.1