Miyakogusa Predicted Gene

Lj3g3v0420620.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T8X8_LOTJA 457 98.3 98.7 (tr|I3T8X8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G21320.1 110 51.0 74.5 | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7465200 REVERSE LENGTH=421
Medicago Medtr3g104670.1 276 65.8 76.3 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr3:48246099-48241678 | 20130731
Soybean Glyma04g05680.1 296 68.8 76.4  
LJGI gnl|LJGI|TC69910 1358 99.7 99.7 similar to UniRef100_A7P4N7 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0420620.1 length: 229 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.2e-12 132-203
HMMSmart SM00360 RNA 2e-08 131-207
ProfileScan PS50102 RRM 12.748 130-216
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 8.9e-18 125-215
IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Molecular Function GO:0017069 snRNA binding    
HMMPanther PTHR10501 U1 1.2e-24 126-219
no_ID  
HMMPanther PTHR10501:SF0 SMALL 1.2e-24 126-219
superfamily SSF54928 RNA-binding 1.4e-14 115-223
Wolf-PSORT
Lj3g3v0420620.1	nucl 12, cyto 1, mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0420620.1