Miyakogusa Predicted Gene

Lj2g3v3413430.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KBU2_SOYBN 1987 87.7 92.0 (tr|K7KBU2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G38200.1 1473 66.3 80.5 | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:17915293-17922502 FORWARD LENGTH=1687

Medicago Medtr5g099310.1 1972 88.3 91.4 | brefeldin A-inhibited guanine nucleotide-exchange protein | HC | chr5:43569792-43551267 | 20130731

Soybean Glyma02g48200.1 1984 87.7 92.0

LJGI gnl|LJGI|GO023982 1338 99.7 99.7 weakly similar to UniRef100_A7P8T5 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v3413430.1 length: 1144 aa.

IPR000904 SEC7-like

method AccNumber shortName E-value location

Molecular Function GO:0005086 ARF guanyl-nucleotide exchange factor activity

Biological Process GO:0032012 regulation of ARF protein signal transduction

HMMPfam PF01369 Sec7 2.2e-50 34-168

HMMSmart SM00222 Sec7 7.5e-55 7-168

ProfileScan PS50190 SEC7 31.242 48-166

superfamily SSF48425 Sec7 2e-54 34-173

IPR011989 Armadillo-like helical

Gene3D G3DSA:1.25.10.10 no description 5e-08 1067-1121

IPR015403 Domain of unknown function DUF1981, SEC7 associated

HMMPfam PF09324 DUF1981 1.4e-28 534-619

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 6.2e-13 329-1140

IPR023394 SEC7-like, alpha orthogonal bundle

Gene3D G3DSA:1.10.1000.11 no description 1.8e-48 59-174

no_ID

HMMPanther PTHR10663 GUANYL-NUCLEOTIDE 0 48-1022

HMMPanther PTHR10663:SF42 SEC7 0 48-1022

Seg seg seg NA 628-636
680-695
780-792

Wolf-PSORT

Lj2g3v3413430.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v3413430.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KBU2_SOYBN	1987	87.7	92.0	(tr\|K7KBU2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G38200.1	1473	66.3	80.5	\| Symbols: \| SEC7-like guanine nucleotide exchange family protein \| chr4:17915293-17922502 FORWARD LENGTH=1687
Medicago	Medtr5g099310.1	1972	88.3	91.4	\| brefeldin A-inhibited guanine nucleotide-exchange protein \| HC \| chr5:43569792-43551267 \| 20130731
Soybean	Glyma02g48200.1	1984	87.7	92.0
LJGI	gnl\|LJGI\|GO023982	1338	99.7	99.7	weakly similar to UniRef100_A7P8T5 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)

IPR000904	SEC7-like
Lj2g3v3413430.1				length: 1144 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005086	ARF guanyl-nucleotide exchange factor activity
Biological Process	GO:0032012	regulation of ARF protein signal transduction
HMMPfam	PF01369	Sec7	2.2e-50	34-168
HMMSmart	SM00222	Sec7	7.5e-55	7-168
ProfileScan	PS50190	SEC7	31.242	48-166
superfamily	SSF48425	Sec7	2e-54	34-173
IPR011989	Armadillo-like helical
Gene3D	G3DSA:1.25.10.10	no description	5e-08	1067-1121
IPR015403	Domain of unknown function DUF1981, SEC7 associated
HMMPfam	PF09324	DUF1981	1.4e-28	534-619
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	6.2e-13	329-1140
IPR023394	SEC7-like, alpha orthogonal bundle
Gene3D	G3DSA:1.10.1000.11	no description	1.8e-48	59-174
no_ID
HMMPanther	PTHR10663	GUANYL-NUCLEOTIDE	0	48-1022
HMMPanther	PTHR10663:SF42	SEC7	0	48-1022
Seg	seg	seg	NA	628-636 680-695 780-792