Miyakogusa Predicted Gene

Lj2g3v2256250.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KE47_MEDTR 462 75.3 79.5 (tr|G7KE47) DAMAGED DNA-BINDING protein OS=Medicago truncatula GN=MTR_5g070310 PE=4 SV=1
TAIR_pep AT5G58760.1 395 63.4 75.8 | Symbols: DDB2 | damaged DNA binding 2 | chr5:23730741-23733606 REVERSE LENGTH=557
Medicago Medtr5g070310.1 472 78.6 82.9 | damaged DNA-binding protein | HC | chr5:29760236-29765378 | 20130731
Soybean Glyma14g37230.1 462 76.3 83.6  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2256250.1 length: 370 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.094 171-205
219-246
HMMSmart SM00320 WD40 4.7 165-205
210-249
ProfileScan PS50082 WD_REPEATS_2 10.107 172-205
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.9e-13 168-261
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.998 172-258
superfamily SSF50978 WD40 1.9e-12 168-298
no_ID  
Coil coil coiled-coil NA 26-48
HMMPanther PTHR15169 DAMAGE-SPECIFIC 1.1e-58 27-309
HMMPanther PTHR15169:SF0 SUBFAMILY 1.1e-58 27-309
Seg seg seg NA 21-48
Wolf-PSORT
Lj2g3v2256250.1	nucl 5, mito 3.5, cyto 3, cyto_mito 2.5, cysk_nucl 2.5, nucl_plas 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2256250.1