Miyakogusa Predicted Gene

Lj2g3v2256250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2256250.1 tr|A9RVV8|A9RVV8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71077
,36.63,0.0000000001,WD40,WD40 repeat; seg,NULL; WD40
repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN,CUFF.38769.1
         (370 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g070310.1 | damaged DNA-binding protein | HC | chr5:297602...   472   e-133

>Medtr5g070310.1 | damaged DNA-binding protein | HC |
           chr5:29760236-29765378 | 20130731
          Length = 558

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/299 (78%), Positives = 248/299 (82%), Gaps = 5/299 (1%)

Query: 1   MAPVTRRVPFPKVVIERDTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVAEIGKNEKL 60
           MAPVTRR  FPKV IERD+                             NGV E  K EKL
Sbjct: 1   MAPVTRRTSFPKVHIERDS-----DSEQSSSSDEEEPLEEEGPLEEEENGVVENEKIEKL 55

Query: 61  EVGLDANRKGKTPITLPLRKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLTC 120
           EVG DANRKGKTPITL LRKVCKVCKKPGHE+GFKGATYIDCPMKPCFLCKTPGHTTL C
Sbjct: 56  EVGFDANRKGKTPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGHTTLNC 115

Query: 121 PHRFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRIT 180
           PHR +TEHGVVPAPR+KT KP EYVFERQLR  IPSIKPK VIPDQVNCAVIRYHSRRIT
Sbjct: 116 PHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPSIKPKCVIPDQVNCAVIRYHSRRIT 175

Query: 181 CLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSAS 240
            LEFHPTKNNI+LSGDKKGQLGVWDF +VHEKVVY + HSC+LNNMKFNPTNDCMVYSAS
Sbjct: 176 SLEFHPTKNNILLSGDKKGQLGVWDFEKVHEKVVYDDKHSCILNNMKFNPTNDCMVYSAS 235

Query: 241 SDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLL 299
           SDGTIS+TDLETG+SSSLMNLNP+GW GP+TWKMLYGMDIN EKGLVLVADNFGFLHL+
Sbjct: 236 SDGTISYTDLETGMSSSLMNLNPDGWHGPNTWKMLYGMDINCEKGLVLVADNFGFLHLV 294