Miyakogusa Predicted Gene

Lj2g3v1757300.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LHS2_SOYBN 1640 81.5 87.2 (tr|I1LHS2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G36630.1 1302 64.5 78.6 | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000

Medicago Medtr8g077680.1 1444 71.6 82.4 | vam6/Vps39-like protein | HC | chr8:33049752-33042308 | 20130731

Soybean Glyma01g38240.1 1649 81.7 87.5

LJGI gnl|LJGI|TC66867 1296 100.0 100.0 similar to UniRef100_A7PUV1 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1757300.1 length: 989 aa.

IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat

method AccNumber shortName E-value location

Biological Process GO:0006886 intracellular protein transport

Biological Process GO:0016192 vesicle-mediated transport

HMMPfam PF00637 Clathrin 8.4e-08 623-753

IPR001180 Citron-like

Molecular Function GO:0005083 small GTPase regulator activity

HMMPfam PF00780 CNH 2.6e-30 24-274

ProfileScan PS50219 CNH 23.671 16-278

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

superfamily SSF50978 WD40 2.7e-06 8-203

IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1

HMMPfam PF10366 Vps39_1 5.7e-26 495-603

IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2

HMMPfam PF10367 Vps39_2 2.2e-31 863-971

no_ID

HMMPanther PTHR12894 CNH 0 1-988

HMMPanther PTHR12894:SF5 TGF 0 1-988

Seg seg seg NA 70-87
495-506
766-779
834-848

Wolf-PSORT

Lj2g3v1757300.1 chlo 6, nucl 5, cysk 3, chlo_mito 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1757300.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LHS2_SOYBN	1640	81.5	87.2	(tr\|I1LHS2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G36630.1	1302	64.5	78.6	\| Symbols: EMB2754 \| Vacuolar sorting protein 39 \| chr4:17272088-17276524 REVERSE LENGTH=1000
Medicago	Medtr8g077680.1	1444	71.6	82.4	\| vam6/Vps39-like protein \| HC \| chr8:33049752-33042308 \| 20130731
Soybean	Glyma01g38240.1	1649	81.7	87.5
LJGI	gnl\|LJGI\|TC66867	1296	100.0	100.0	similar to UniRef100_A7PUV1 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
Lj2g3v1757300.1				length: 989 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006886	intracellular protein transport
Biological Process	GO:0016192	vesicle-mediated transport
HMMPfam	PF00637	Clathrin	8.4e-08	623-753
IPR001180	Citron-like
Molecular Function	GO:0005083	small GTPase regulator activity
HMMPfam	PF00780	CNH	2.6e-30	24-274
ProfileScan	PS50219	CNH	23.671	16-278
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
superfamily	SSF50978	WD40	2.7e-06	8-203
IPR019452	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
HMMPfam	PF10366	Vps39_1	5.7e-26	495-603
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
HMMPfam	PF10367	Vps39_2	2.2e-31	863-971
no_ID
HMMPanther	PTHR12894	CNH	0	1-988
HMMPanther	PTHR12894:SF5	TGF	0	1-988
Seg	seg	seg	NA	70-87 495-506 766-779 834-848