Miyakogusa Predicted Gene

Lj2g3v0915090.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MVR8_SOYBN 1318 86.6 90.4 (tr|K7MVR8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G08390.1 873 55.5 67.0 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:2701448-2706910 FORWARD LENGTH=839
Medicago Medtr6g004040.1 1278 83.7 89.3 | katanin p80 WD40 repeat subunit B1-like protein | HC | chr6:91770-77124 | 20130731
Soybean Glyma05g09360.1 810 79.5 81.7  
LJGI gnl|LJGI|CB828719 404 100.0 100.0 similar to UniRef100_A7QNQ6 Cluster: Chromosome undetermined scaffold_133, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_133, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0915090.1 length: 758 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.8e-11 9-44
53-87
92-129
135-171
175-213
HMMSmart SM00320 WD40 9.8 5-45
48-87
90-129
132-171
174-213
216-254
ProfileScan PS50082 WD_REPEATS_2 16.557 12-54
55-96
97-138
139-180
181-222
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.1e-79 9-298
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 59.532 12-245
superfamily SSF50978 WD40 4e-71 12-295
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 158-172
200-214
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.7e-08 116-130
158-172
200-214
IPR026962 Katanin p80 subunit B1
Molecular Function GO:0008017 microtubule binding    
Cellular Component GO:0008352 katanin complex    
Biological Process GO:0051013 microtubule severing    
HMMPanther PTHR19845 KATANIN 1.8e-208 1-758
no_ID  
HMMPfam PF13925 Katanin_con80 9.8e-46 595-755
Seg seg seg NA 59-70
485-495
Wolf-PSORT
Lj2g3v0915090.1	chlo 9, nucl 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0915090.1