Miyakogusa Predicted Gene

Lj1g3v3979350.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MXX4_SOYBN 1387 83.3 88.5 (tr|K7MXX4) Uncharacterized protein (Fragment) OS=Glycine max PE=3 SV=1
TAIR_pep AT3G03710.1 1174 68.5 77.9 | Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922
Medicago Medtr7g086640.1 1434 78.4 83.2 | polyribonucleotide nucleotidyltransferase | HC | chr7:33669227-33648523 | 20130731
Soybean Glyma16g04030.1 1153 85.5 90.7  
LJGI gnl|LJGI|GO025275 1205 99.8 99.8 similar to UniRef100_O24288 Cluster: Polynucleotide phosphorylase; n=1; Pisum sativum|Rep: Polynucleotide phosphorylase - Pisum sativum (Garden pea), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3979350.2 length: 922 aa.
IPR001247 Exoribonuclease, phosphorolytic domain 1
method AccNumber shortName E-value location
HMMPfam PF01138 RNase_PH 3.1e-20 92-222
450-584
IPR003029 Ribosomal protein S1, RNA-binding domain
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00575 S1 9.7e-13 764-826
ProfileScan PS50126 S1 18.919 757-826
IPR004087 K Homology domain
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 K 7.5e-05 686-752
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 1.3e-07 691-747
ProfileScan PS50084 KH_TYPE_1 10.441 687-747
IPR012162 Polyribonucleotide nucleotidyltransferase
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity    
Biological Process GO:0006402 mRNA catabolic process    
HAMAP MF_01595 PNPase 26.232 81-829
HMMPanther PTHR11252 POLYRIBONUCLEOTIDE 0 32-878
HMMTigr TIGR03591 polynuc_phos: 2.2e-165 415-827
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.8e-19 753-830
superfamily SSF50249 Nucleic 1e-17 754-832
IPR015847 Exoribonuclease, phosphorolytic domain 2
HMMPfam PF03725 RNase_PH_C 3.4e-06 226-289
589-663
superfamily SSF55666 Ribonuclease 4.6e-25 219-320
581-694
IPR015848 Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type
Molecular Function GO:0000175 3'-5'-exoribonuclease activity    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
Gene3D G3DSA:1.10.10.400 no description 1.3e-11 414-441
HMMPfam PF03726 PNPase 1.7e-05 319-447
superfamily SSF46915 Polynucleotide 4e-13 316-448
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 1.5e-41 75-222
429-584
IPR022967 RNA-binding domain, S1
HMMSmart SM00316 Ribosomal 1e-22 755-826
IPR027408 PNPase/RNase PH domain
Gene3D G3DSA:3.30.230.70 no description 5.4e-78 85-303
442-674
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 7.9e-13 685-752
Seg seg seg NA 21-31
380-402
830-841
865-875
superfamily SSF54791 Eukaryotic 8.8e-13 681-757
Wolf-PSORT
Lj1g3v3979350.2	chlo 13.5, chlo_mito 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3979350.2