Miyakogusa Predicted Gene
- Lj1g3v3979350.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3979350.2 tr|O24288|O24288_PEA Polynucleotide phosphorylase
OS=Pisum sativum GN=pnp PE=2 SV=1,81.38,0,K homology RNA-binding
domain,K Homology domain; Ribosomal protein S1-like RNA-binding
domain,RNA-bi,CUFF.31742.2
(2769 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO025275 similar to UniRef100_O24288 Cluster: Polynucle... 1205 0.0
gnl|LJGI|TC80203 72 2e-11
>gnl|LJGI|GO025275 similar to UniRef100_O24288 Cluster: Polynucleotide phosphorylase;
n=1; Pisum sativum|Rep: Polynucleotide phosphorylase -
Pisum sativum (Garden pea), partial (13%)
Length = 616
Score = 1205 bits (608), Expect = 0.0
Identities = 611/612 (99%)
Strand = Plus / Plus
Query: 2158 gaggctattgatacagatgataatggcacggtgaaaatatttgcaagggatttgtctagt 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggctattgatacagatgataatggcacggtgaaaatatttgcaagggatttgtctagt 61
Query: 2218 ttagagaggtctaaagctatgattagtaatttgacaatggttccggctattggcgatata 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttagagaggtctaaagctatgattagtaatttgacaatggttccggctattggcgatata 121
Query: 2278 tataggaactgtgaaatcaaatcaatagctccatatggagtttttgtagagatagctcct 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tataggaactgtgaaatcaaatcaatagctccatatggagtttttgtagagatagctcct 181
Query: 2338 ggacgagagggactttgccatattagtgaactgagttcaggttggttacccaaggcagaa 2397
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gggcgagagggactttgccatattagtgaactgagttcaggttggttacccaaggcagaa 241
Query: 2398 gatgttttcaaagtgggagatcgtattgatgtaaagcttatagagataaatgacaaagga 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gatgttttcaaagtgggagatcgtattgatgtaaagcttatagagataaatgacaaagga 301
Query: 2458 cagttgcgtcttagtcaccgagctctgcttcctgatacagatccagacaattcagattca 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagttgcgtcttagtcaccgagctctgcttcctgatacagatccagacaattcagattca 361
Query: 2518 aatagccaagcaaaagatggtatagctgaggagaagattgaacaacctaaggataagatt 2577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatagccaagcaaaagatggtatagctgaggagaagattgaacaacctaaggataagatt 421
Query: 2578 aacactcccaaaggcgactcatctaaaaggagttcaagggacgattcggcacttccatca 2637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aacactcccaaaggcgactcatctaaaaggagttcaagggacgattcggcacttccatca 481
Query: 2638 aaaaagtttatcaggagaatggtcagcccttcccaggataaacctgtcactaacaaggac 2697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaaaagtttatcaggagaatggtcagcccttcccaggataaacctgtcactaacaaggac 541
Query: 2698 aagataaagaggagtagcaacaaagcagagtctgacaaagatgaaagtagtttggttagt 2757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagataaagaggagtagcaacaaagcagagtctgacaaagatgaaagtagtttggttagt 601
Query: 2758 gaagaggcgtaa 2769
||||||||||||
Sbjct: 602 gaagaggcgtaa 613
>gnl|LJGI|TC80203
Length = 519
Score = 71.9 bits (36), Expect = 2e-11
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 2734 aaagatgaaagtagtttggttagtgaagaggcgtaa 2769
||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagatgaaagtagtttggttagtgaagaggcgtaa 36