Miyakogusa Predicted Gene
- Lj1g3v3137840.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7L8W6_SOYBN |
999 |
70.1 |
79.0 |
(tr|K7L8W6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G07290.1 |
382 |
47.6 |
60.8 |
| Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-2298491 FORWARD LENGTH=907 |
| Medicago |
Medtr7g020950.1 |
550 |
58.0 |
68.1 |
| RNA recognition motif 1 in plant MEI2-like protein | HC | chr7:6550688-6555387 | 20130731 |
| Soybean |
Glyma08g28860.1 |
767 |
67.6 |
75.8 |
|
| LJGI |
gnl|LJGI|TC64908 |
63.9 |
86.8 |
86.8 |
homologue to UniRef100_Q6J739 Cluster: AML1; n=1; Medicago truncatula|Rep: AML1 - Medicago truncatula (Barrel medic), partial (14%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3137840.1 |
length: 739 aa. |
| IPR007201 |
RNA recognition motif 2 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF04059 |
RRM_2 |
7.8e-53 |
585-681 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
2e-05 |
582-655 |
| no_ID |
|
| HMMPanther |
PTHR24011 |
FAMILY |
1.3e-23 |
57-217 |
| HMMPanther |
PTHR24011:SF98 |
SUBFAMILY |
1.3e-23 |
57-217 |
| superfamily |
SSF54928 |
RNA-binding |
1.6e-16 |
585-674 |
- Wolf-PSORT
Lj1g3v3137840.1 nucl 9, pero 2, chlo 1, extr 1, vacu 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3137840.1 |
|