Miyakogusa Predicted Gene

Lj1g3v1788130.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KTA0_SOYBN 594 78.0 86.8 (tr|K7KTA0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G12080.3 444 58.5 77.0 | Symbols: MSL10, ATMSL10 | mechanosensitive channel of small conductance-like 10 | chr5:3898182-3900923 REVERSE LENGTH=734
Medicago Medtr3g104920.2 570 73.1 84.5 | mechanosensitive ion channel family protein | HC | chr3:48362934-48366611 | 20130731
Soybean Glyma06g05800.1 594 78.0 86.8  
LJGI gnl|LJGI|TC66057 61.9 91.5 91.5 weakly similar to UniRef100_A7QN75 Cluster: Chromosome undetermined scaffold_131, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_131, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1788130.1 length: 367 aa.
IPR006685 Mechanosensitive ion channel MscS
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00924 MS_channel 2.3e-25 141-346
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 1e-13 183-250
no_ID  
Gene3D G3DSA:2.30.30.60 no description 1.3e-10 200-249
HMMPanther PTHR31618 FAMILY 1.4e-195 1-364
HMMPanther PTHR31618:SF0 SUBFAMILY 1.4e-195 1-364
Seg seg seg NA 146-158
166-176
Putative transmembrane regions
  From To
TM segments
SOSUI		 145 167
185 207
Wolf-PSORT
Lj1g3v1788130.1	plas 8, E.R. 4, nucl_plas 4, cysk_plas 4, cyto_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1788130.1