Miyakogusa Predicted Gene
- Lj1g3v0318000.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7N3A7_SOYBN |
398 |
80.2 |
89.3 |
(tr|K7N3A7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G50000.1 |
310 |
65.1 |
78.4 |
| Symbols: | methyltransferases | chr1:18515183-18517244 REVERSE LENGTH=296 |
| Medicago |
Medtr1g106055.3 |
398 |
80.4 |
89.2 |
| ribosomal RNA small subunit methyltransferase E | HC | chr1:47990418-47994872 | 20130731 |
| Soybean |
Glyma20g27210.2 |
397 |
80.2 |
89.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0318000.2 |
length: 239 aa. |
| IPR006700 |
Ribosomal RNA small subunit methyltransferase E |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006364 |
rRNA processing |
|
|
| Molecular Function |
GO:0008168 |
methyltransferase activity |
|
|
| HMMPfam |
PF04452 |
Methyltrans_RNA |
2.1e-38 |
56-239 |
| HMMTigr |
TIGR00046 |
TIGR00046: |
1.6e-24 |
54-239 |
| IPR015947 |
PUA-like domain |
| superfamily |
SSF88697 |
PUA |
6.5e-13 |
41-110 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.1280.10 |
no description |
2.4e-43 |
41-239 |
| HMMPanther |
PTHR30027 |
RIBOSOMAL |
2.2e-19 |
39-239 |
| superfamily |
SSF75217 |
alpha/beta |
6.6e-21 |
113-239 |
- Wolf-PSORT
Lj1g3v0318000.2 chlo 8, chlo_mito 6.83333, mito 3.5, cyto_mito 2.66667
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0318000.2 |
|