Miyakogusa Predicted Gene

Lj1g3v0117750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JAN8_SOYBN 1286 79.3 88.5 (tr|I1JAN8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G13270.1 866 56.0 73.6 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4246954-4249212 REVERSE LENGTH=752
Medicago Medtr4g031160.1 471 40.0 58.4 | pentatricopeptide (PPR) repeat protein | HC | chr4:10600555-10597860 | 20130731
Soybean Glyma01g44440.1 1286 79.3 88.5  
LJGI gnl|LJGI|TC82021 2639 99.6 99.6 similar to UniRef100_A7QT63 Cluster: Chromosome chr1 scaffold_166, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_166, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0117750.1 length: 764 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.056 130-156
259-289
532-556
598-626
HMMPfam PF13041 PPR_2 1.9e-09 156-203
357-405
458-505
HMMPfam PF13812 PPR_3 0.38 332-354
HMMTigr TIGR00756 PPR: 0.00022 128-157
158-191
360-393
462-494
533-556
ProfileScan PS51375 PPR 8.901 156-190
125-155
91-121
56-90
191-225
257-291
226-256
292-326
358-392
327-357
393-427
459-492
529-559
493-528
595-629
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.9e-08 542-675
no_ID  
HMMPanther PTHR24015 FAMILY 2.3e-250 79-764
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 2.3e-250 79-764
HMMPfam PF14432 DYW_deaminase 1.6e-11 643-754
Seg seg seg NA 13-22
superfamily SSF48452 TPR-like 0.02 448-620
130-383
Wolf-PSORT
Lj1g3v0117750.1	chlo 8, nucl 2, cyto 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0117750.1