Miyakogusa Predicted Gene

Lj1g3v0116710.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JAN8_SOYBN 940 80.6 90.6 (tr|I1JAN8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G13270.1 650 55.9 74.9 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4246954-4249212 REVERSE LENGTH=752
Medicago Medtr6g032915.1 367 33.3 56.7 | pentatricopeptide (PPR) repeat protein | HC | chr6:10235820-10240817 | 20130731
Soybean Glyma01g44440.1 940 80.6 90.6  
LJGI gnl|LJGI|TC82021 1855 99.6 99.6 similar to UniRef100_A7QT63 Cluster: Chromosome chr1 scaffold_166, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_166, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0116710.1 length: 550 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.038 48-74
177-207
450-474
516-544
HMMPfam PF13041 PPR_2 1.3e-09 74-121
275-323
376-423
HMMPfam PF13812 PPR_3 0.26 250-272
HMMTigr TIGR00756 PPR: 0.00015 48-75
76-109
177-211
278-311
380-412
451-475
ProfileScan PS51375 PPR 8.901 74-108
43-73
9-39
109-143
175-209
144-174
210-244
276-310
245-275
311-345
377-410
447-477
411-446
513-547
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6e-08 460-538
no_ID  
HMMPanther PTHR24015 FAMILY 4.1e-186 6-549
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 4.1e-186 6-549
superfamily SSF48452 TPR-like 0.02 366-538
48-301
Wolf-PSORT
Lj1g3v0116710.1	cyto 8, chlo 2, nucl 1, mito 1, vacu 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0116710.1