Miyakogusa Predicted Gene

Lj0g3v0310479.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LIT2_SOYBN 369 60.5 69.5 (tr|K7LIT2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G33270.1 212 38.7 54.5 | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457
Medicago Medtr2g060710.1 353 58.0 68.9 | transducin/WD40 repeat protein | HC | chr2:25747612-25744900 | 20130731
Soybean Glyma10g22670.1 351 64.6 73.7  
LJGI gnl|LJGI|TC59011 708 100.0 100.0 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0310479.1 length: 257 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.014 69-100
112-147
157-195
211-230
HMMSmart SM00320 WD40 1.1 24-64
67-104
108-147
153-195
198-230
ProfileScan PS50082 WD_REPEATS_2 9.573 32-73
115-147
211-231
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 9.7e-46 15-234
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 27.026 1-204
superfamily SSF50978 WD40 1.9e-48 6-230
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 134-148
182-196
217-231
no_ID  
HMMPanther PTHR19918 CELL 4e-88 1-257
HMMPanther PTHR19918:SF0 SUBFAMILY 4e-88 1-257
Wolf-PSORT
Lj0g3v0310479.1	extr 5, chlo 4, cyto 3, mito 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0310479.1