Miyakogusa Predicted Gene

Lj0g3v0287969.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7JMY6_MEDTR 921 79.1 86.2 (tr|G7JMY6) Peptide transporter PTR1 OS=Medicago truncatula GN=MTR_4g015080 PE=3 SV=1

TAIR_pep AT3G54140.1 798 69.0 81.1 | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570

Medicago Medtr4g015080.1 921 79.1 86.2 | proton-dependent oligopeptide transport family protein | HC | chr4:4369051-4366700 | 20130731

Soybean Glyma01g27490.1 915 78.1 85.5

LJGI gnl|LJGI|BP071089 432 100.0 100.0 similar to UniRef100_O48542 Cluster: Peptide transporter; n=1; Hordeum vulgare|Rep: Peptide transporter - Hordeum vulgare (Barley), partial (15%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0287969.1 length: 558 aa.

IPR000109 Proton-dependent oligopeptide transporter family

method AccNumber shortName E-value location

Molecular Function GO:0005215 transporter activity

Biological Process GO:0006810 transport

Cellular Component GO:0016020 membrane

HMMPanther PTHR11654 OLIGOPEPTIDE 0 12-558

HMMPfam PF00854 PTR2 2e-109 105-505

IPR016196 Major facilitator superfamily domain, general substrate transporter

superfamily SSF103473 MFS 1.4e-28 1-558

IPR018456 PTR2 family proton/oligopeptide symporter, conserved site

Molecular Function GO:0005215 transporter activity

Biological Process GO:0006857 oligopeptide transport

Cellular Component GO:0016020 membrane

PatternScan PS01022 PTR2_1 NA 94-118

PatternScan PS01023 PTR2_2 NA 191-203

no_ID

Gene3D G3DSA:1.20.1250.20 no description 1.1e-14 51-239

HMMPanther PTHR11654:SF37 OLIGOPEPTIDE 0 12-558

Seg seg seg NA 224-238
512-529

Putative transmembrane regions

From To

TM segments
SOSUI 78 100

111 133

145 167

191 213

219 240

331 353

384 405

422 444

456 478

498 520

Wolf-PSORT

Lj0g3v0287969.1 plas 11, vacu 1, E.R. 1, golg 1, E.R._vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0287969.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7JMY6_MEDTR	921	79.1	86.2	(tr\|G7JMY6) Peptide transporter PTR1 OS=Medicago truncatula GN=MTR_4g015080 PE=3 SV=1
TAIR_pep	AT3G54140.1	798	69.0	81.1	\| Symbols: ATPTR1, PTR1 \| peptide transporter 1 \| chr3:20045885-20048154 REVERSE LENGTH=570
Medicago	Medtr4g015080.1	921	79.1	86.2	\| proton-dependent oligopeptide transport family protein \| HC \| chr4:4369051-4366700 \| 20130731
Soybean	Glyma01g27490.1	915	78.1	85.5
LJGI	gnl\|LJGI\|BP071089	432	100.0	100.0	similar to UniRef100_O48542 Cluster: Peptide transporter; n=1; Hordeum vulgare\|Rep: Peptide transporter - Hordeum vulgare (Barley), partial (15%)

IPR000109	Proton-dependent oligopeptide transporter family
Lj0g3v0287969.1				length: 558 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
HMMPanther	PTHR11654	OLIGOPEPTIDE	0	12-558
HMMPfam	PF00854	PTR2	2e-109	105-505
IPR016196	Major facilitator superfamily domain, general substrate transporter
superfamily	SSF103473	MFS	1.4e-28	1-558
IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006857	oligopeptide transport
Cellular Component	GO:0016020	membrane
PatternScan	PS01022	PTR2_1	NA	94-118
PatternScan	PS01023	PTR2_2	NA	191-203
no_ID
Gene3D	G3DSA:1.20.1250.20	no description	1.1e-14	51-239
HMMPanther	PTHR11654:SF37	OLIGOPEPTIDE	0	12-558
Seg	seg	seg	NA	224-238 512-529

	From	To
TM segments SOSUI	78	100
	111	133
	145	167
	191	213
	219	240
	331	353
	384	405
	422	444
	456	478
	498	520