Miyakogusa Predicted Gene
- Lj0g3v0269409.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MB82_SOYBN |
1117 |
89.3 |
94.1 |
(tr|K7MB82) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G17205.3 |
920 |
72.5 |
83.3 |
| Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029 |
| Medicago |
Medtr2g033040.1 |
1122 |
89.8 |
94.4 |
| E3 ubiquitin-protein ligase UPL6 | HC | chr2:12491348-12468569 | 20130731 |
| Soybean |
Glyma17g04180.1 |
1042 |
83.4 |
90.0 |
|
| LJGI |
gnl|LJGI|TC79035 |
2375 |
99.7 |
99.7 |
similar to UniRef100_Q8RWB8 Cluster: E3 ubiquitin-protein ligase UPL6; n=1; Arabidopsis thaliana|Rep: E3 ubiquitin-protein ligase UPL6 - Arabidopsis thaliana (Mouse-ear cress), partial (38%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0269409.1 |
length: 610 aa. |
| IPR000569 |
HECT |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004842 |
ubiquitin-protein ligase activity |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Biological Process |
GO:0006464 |
cellular protein modification process |
|
|
| HMMPfam |
PF00632 |
HECT |
5.6e-40 |
425-609 |
| HMMSmart |
SM00119 |
Domain |
3.3e-13 |
387-610 |
| ProfileScan |
PS50237 |
HECT |
49.143 |
389-610 |
| superfamily |
SSF56204 |
Hect, |
7.5e-61 |
345-610 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.2160.10 |
no description |
9.4e-17 |
498-571 |
| HMMPanther |
PTHR11254 |
HECT |
9.4e-142 |
339-606 |
| HMMPanther |
PTHR11254:SF93 |
PREDICTED: |
9.4e-142 |
339-606 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
133 |
155 |
| 197 |
219 |
- Wolf-PSORT
Lj0g3v0269409.1 extr 5, vacu 3, nucl 2, chlo 1, cyto 1, mito 1, plas 1, chlo_mito 1, cysk_nucl 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0269409.1 |
|