Miyakogusa Predicted Gene
- Lj0g3v0181109.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SAB9_LOTJA |
315 |
93.4 |
93.4 |
(tr|I3SAB9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G28370.1 |
214 |
62.7 |
76.2 |
| Symbols: | Uncharacterised protein family (UPF0497) | chr2:12132092-12133447 FORWARD LENGTH=179 |
| Medicago |
Medtr4g058950.1 |
221 |
58.6 |
70.7 |
| CASP-like protein | HC | chr4:21730613-21736333 | 20130731 |
| Soybean |
Glyma16g27190.1 |
280 |
81.7 |
87.1 |
|
| LJGI |
gnl|LJGI|TC72628 |
977 |
96.7 |
96.7 |
similar to UniRef100_A7PI43 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0181109.1 |
length: 182 aa. |
| IPR006702 |
Uncharacterised protein family UPF0497, trans-membrane plant |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF04535 |
DUF588 |
2.6e-25 |
44-167 |
| no_ID |
|
| HMMPanther |
PTHR32021 |
FAMILY |
6e-44 |
27-182 |
| HMMPanther |
PTHR32021:SF0 |
SUBFAMILY |
6e-44 |
27-182 |
| Seg |
seg |
seg |
NA |
36-47 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
37 |
59 |
| 71 |
93 |
| 119 |
141 |
| 157 |
179 |
- Wolf-PSORT
Lj0g3v0181109.1 golg 3, chlo 2, cyto 2, E.R. 2, nucl_plas 2, cyto_E.R. 2, nucl 1.5, plas 1.5, chlo_mito 1.5, E.R._vacu 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0181109.1 |
|