Miyakogusa Predicted Gene
- Lj0g3v0175929.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LUZ7_SOYBN |
380 |
81.9 |
92.9 |
(tr|I1LUZ7) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT3G15380.1 |
353 |
76.2 |
87.6 |
| Symbols: | Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700 |
| Medicago |
Medtr8g059125.1 |
348 |
75.4 |
86.7 |
| plasma-membrane choline transporter family protein | HC | chr8:20671850-20679163 | 20130731 |
| Soybean |
Glyma12g35170.1 |
380 |
81.9 |
92.9 |
|
| LJGI |
gnl|LJGI|TC59977 |
396 |
84.2 |
84.2 |
similar to UniRef100_A7P1K2 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0175929.1 |
length: 208 aa. |
| IPR007603 |
Choline transporter-like |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR12385 |
CTL |
4.3e-128 |
1-208 |
| no_ID |
|
| HMMPanther |
PTHR12385:SF5 |
UNCHARACTERIZED |
4.3e-128 |
1-208 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
32 |
54 |
- Wolf-PSORT
Lj0g3v0175929.1 chlo 3, cyto 3, nucl 2, plas 2, chlo_mito 2, nucl_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0175929.1 |
|