Miyakogusa Predicted Gene

Lj0g3v0105849.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JKP9_MEDTR 239 62.0 70.9 (tr|G7JKP9) RING finger family protein OS=Medicago truncatula GN=MTR_4g030070 PE=4 SV=1
TAIR_pep AT4G10150.1 154 43.9 59.8 | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236
Medicago Medtr4g030070.1 239 62.0 70.9 | zinc finger, C3HC4 type (RING finger) protein | HC | chr4:10364008-10366917 | 20130731
Soybean Glyma09g00380.1 227 58.1 65.4  
LJGI gnl|LJGI|TC75381 478 100.0 100.0 similar to UniRef100_A7Q7T5 Cluster: Chromosome chr18 scaffold_61, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_61, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0105849.1 length: 244 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 2.7e-14 113-156
HMMSmart SM00184 Ring 6.6e-06 114-155
ProfileScan PS50089 ZF_RING_2 12.593 114-156
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.5e-17 110-159
no_ID  
HMMPanther PTHR22765 RING 8.6e-56 14-181
HMMPanther PTHR22765:SF23 PROTEIN 8.6e-56 14-181
Seg seg seg NA 2-23
35-55
superfamily SSF57850 RING/U-box 1.8e-20 88-162
Putative transmembrane regions
  From To
TM segments
SOSUI		 29 51
Wolf-PSORT
Lj0g3v0105849.1	chlo 4, nucl 3.5, cysk_nucl 2.5, extr 2, cyto 1, mito 1, plas 1, vacu 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0105849.1