Miyakogusa Predicted Gene

Lj0g3v0102149.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2HW77_MEDTR 288 69.5 84.5 (tr|Q2HW77) RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal OS=Medicago truncatula GN=MtrDRAFT_AC147774g17v1 PE=4 SV=1
TAIR_pep AT3G54490.1 200 49.5 67.5 | Symbols: RPB5E | RNA polymerase II fifth largest subunit, E | chr3:20173673-20175297 FORWARD LENGTH=233
Medicago Medtr7g090220.1 207 49.5 72.0 | DNA-directed RNA polymerase II | HC | chr7:35416865-35412434 | 20130731
Soybean Glyma03g28510.1 209 50.5 72.0  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0102149.1 length: 218 aa.
IPR000783 RNA polymerase, subunit H/Rpb5 C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
BlastProDom PD005155 Q9M1H8_ARATH_Q9M1H8; 3e-15 154-218
Gene3D G3DSA:3.90.940.20 no description 1.1e-25 146-217
HMMPfam PF01191 RNA_pol_Rpb5_C 1.4e-27 145-217
superfamily SSF55287 RPB5-like 2.2e-23 147-218
IPR005571 RNA polymerase, Rpb5, N-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:3.40.1340.10 no description 5e-27 18-145
HMMPfam PF03871 RNA_pol_Rpb5_N 3.5e-16 20-102
superfamily SSF53036 Eukaryotic 1.3e-25 17-146
IPR014381 DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus
HMMPIR PIRSF000747 DNA-directed 1.3e-66 1-218
no_ID  
HMMPanther PTHR10535 FAMILY 6.8e-72 14-218
HMMPanther PTHR10535:SF0 DNA-DIRECTED 6.8e-72 14-218
Seg seg seg NA 7-18
Wolf-PSORT
Lj0g3v0102149.1	nucl 6, extr 5, cyto 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0102149.1