Miyakogusa Predicted Gene

Lj0g3v0102149.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102149.1 tr|Q2HW77|Q2HW77_MEDTR RNA polymerase subunit,
RPB5; RNA polymerase Rpb5, N-terminal OS=Medicago
tru,64.35,0,RNA_pol_Rpb5_C,RNA polymerase, subunit H/Rpb5 C-terminal;
RNA_pol_Rpb5_N,RNA polymerase, Rpb5, N-ter,CUFF.5754.1
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g28510.1                                                       209   2e-54
Glyma19g31250.1                                                       172   2e-43
Glyma11g21560.1                                                       164   7e-41
Glyma04g26720.1                                                       145   3e-35
Glyma07g09230.1                                                       125   5e-29
Glyma09g32550.1                                                       122   3e-28
Glyma11g21570.1                                                       114   6e-26

>Glyma03g28510.1 
          Length = 236

 Score =  209 bits (532), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/200 (50%), Positives = 144/200 (72%)

Query: 19  VESRRYFQCLQTVLEMLRDRGYDVPLTDLNLSLSEFRSRFGQQPNPQTLGVCVSHRSRPS 78
           VES RY+   +T LEML+DRGY +P  +++LSLS+FR   GQ P+P  L + ++H +  S
Sbjct: 37  VESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDMHGQFPDPDRLRLSLTHATNSS 96

Query: 79  NKVQVVFAGTDQIKKGTISGICDQIVDRERLTRLILIVQSKMTSFALKVLEQKPYKVEII 138
            ++ V+F G   +K   I  I  QI++R+ LT LILIV++ +TS ALK +    +KVEI 
Sbjct: 97  KRILVIFCGPGVVKVTAIRNIAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIF 156

Query: 139 KLSDLLVNITNHVLQPKYEILSANEKQKLLMKYKLEDKQLPYMLRTDAIARYYGLEKGQV 198
           +++DLLVNIT HVL+PK+++L+  +K  LL KY +E+KQLP ML+TDAIARYYGLE+GQV
Sbjct: 157 QITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQV 216

Query: 199 IKITHSADMVNSLVTYRCVL 218
           +K+T+S ++    VTYRCV 
Sbjct: 217 VKVTYSGEVTQMHVTYRCVW 236


>Glyma19g31250.1 
          Length = 180

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 125/174 (71%)

Query: 34  MLRDRGYDVPLTDLNLSLSEFRSRFGQQPNPQTLGVCVSHRSRPSNKVQVVFAGTDQIKK 93
           ML++RGY +P  +++LSLS+F    GQ P+P  L + ++H +  S ++ V+F     +K 
Sbjct: 1   MLKNRGYSIPSHEIDLSLSDFHDMHGQSPDPDRLRLSLTHATNSSKRILVIFCEPGVVKV 60

Query: 94  GTISGICDQIVDRERLTRLILIVQSKMTSFALKVLEQKPYKVEIIKLSDLLVNITNHVLQ 153
             I  I  QI++R+ LT L+LIV++ +TS ALK +    +KVEI +++DLLVNIT HVL+
Sbjct: 61  TAIQNIAGQIINRDTLTGLMLIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLK 120

Query: 154 PKYEILSANEKQKLLMKYKLEDKQLPYMLRTDAIARYYGLEKGQVIKITHSADM 207
           PK ++L+  +K+ LL KY +++KQLP ML TDAIARYYGLE+GQV+K+T+S ++
Sbjct: 121 PKQQVLTDKQKKNLLKKYNIKEKQLPRMLLTDAIARYYGLERGQVVKVTYSGEI 174


>Glyma11g21560.1 
          Length = 171

 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 1/127 (0%)

Query: 19  VESRRYFQCLQTVLEMLRDRGYDV-PLTDLNLSLSEFRSRFGQQPNPQTLGVCVSHRSRP 77
           +ES RYF   +T+LEML+DRGYDV    +L+ SL+EFRSRFGQ PNPQTL  CVSH S P
Sbjct: 14  MESLRYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQTLAFCVSHLSNP 73

Query: 78  SNKVQVVFAGTDQIKKGTISGICDQIVDRERLTRLILIVQSKMTSFALKVLEQKPYKVEI 137
           SN VQVVFAGTD I+KGT++ IC QI D+ RL  LIL+VQSKMTSFA K LE  P+KVEI
Sbjct: 74  SNTVQVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLESLPFKVEI 133

Query: 138 IKLSDLL 144
           I+++ ++
Sbjct: 134 IRVNSVI 140


>Glyma04g26720.1 
          Length = 99

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 83/99 (83%)

Query: 120 MTSFALKVLEQKPYKVEIIKLSDLLVNITNHVLQPKYEILSANEKQKLLMKYKLEDKQLP 179
           MTSFA K LE  P+KVE IK+ DLLVNIT HVLQPKYEIL+ +EKQ LL K+ L++KQLP
Sbjct: 1   MTSFAKKDLENFPFKVETIKIDDLLVNITKHVLQPKYEILTDDEKQALLTKHNLDEKQLP 60

Query: 180 YMLRTDAIARYYGLEKGQVIKITHSADMVNSLVTYRCVL 218
           +ML+TD IARYYGLEKGQV+KITHS  +VN  V+YRCV+
Sbjct: 61  HMLKTDTIARYYGLEKGQVVKITHSGPVVNFDVSYRCVV 99


>Glyma07g09230.1 
          Length = 206

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 122/201 (60%), Gaps = 3/201 (1%)

Query: 20  ESRRYFQCLQTVLEMLRDRGYDVPLTDLNLSLSEFRSRFGQQPNPQTLGVCVSHRSRPSN 79
           E  R ++  +TV++MLRDRG+ V   ++N+S  EF+S++G+    + L +  S +    +
Sbjct: 7   EMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGD 66

Query: 80  KVQVVFAGTDQIKKGTISGICDQIVDRERLTRLILIVQSKMTSFALKVLEQ--KPYKVEI 137
           ++ V F    ++   T+    +++ + E + R IL+ Q+ +T FA   + +    + +E+
Sbjct: 67  QIYVFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEV 125

Query: 138 IKLSDLLVNITNHVLQPKYEILSANEKQKLLMKYKLEDKQLPYMLRTDAIARYYGLEKGQ 197
            + ++LLVNI  H L P++++L+  EK+ LL +Y +++ QLP +  TD +ARYYGL++GQ
Sbjct: 126 FQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 185

Query: 198 VIKITHSADMVNSLVTYRCVL 218
           V+KI   ++     VTYR V+
Sbjct: 186 VVKIIRPSETAGRYVTYRFVV 206


>Glyma09g32550.1 
          Length = 206

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 23  RYFQCLQTVLEMLRDRGYDVPLTDLNLSLSEFRSRFGQQPNPQTLGVCVSHRSRPSNKVQ 82
           R ++  +TV++MLRDR + V   ++N+S  EF+S++G+    + L +  S +    +++ 
Sbjct: 10  RLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIY 69

Query: 83  VVFAGTDQIKKGTISGICDQIVDRERLTRLILIVQSKMTSFALKVLEQ--KPYKVEIIKL 140
           V F    ++   T+    +++ + E + R IL+ Q+ +T FA   + +    + +E+ + 
Sbjct: 70  VFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQE 128

Query: 141 SDLLVNITNHVLQPKYEILSANEKQKLLMKYKLEDKQLPYMLRTDAIARYYGLEKGQVIK 200
           ++LLVNI  H L P++++L+  EK+ LL +Y +++ QLP +  TD +ARYYGL++GQV+K
Sbjct: 129 AELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVK 188

Query: 201 ITHSADMVNSLVTYRCVL 218
           I   ++     VTYR V+
Sbjct: 189 IIRPSETAGRYVTYRFVV 206


>Glyma11g21570.1 
          Length = 79

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 67/79 (84%)

Query: 140 LSDLLVNITNHVLQPKYEILSANEKQKLLMKYKLEDKQLPYMLRTDAIARYYGLEKGQVI 199
           + DLLVNIT HVLQPKYEIL+ +EK+ LL K+ L++KQLP+ML+TDAIA YYGLEKGQV+
Sbjct: 1   IDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQLPHMLKTDAIASYYGLEKGQVV 60

Query: 200 KITHSADMVNSLVTYRCVL 218
           KITH   +V+  V+YRCV+
Sbjct: 61  KITHRGPVVDFHVSYRCVV 79