Miyakogusa Predicted Gene

Lj0g3v0059959.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L026_SOYBN 973 68.6 77.8 (tr|I1L026) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G16390.1 757 56.6 73.0 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-containing protein | chr4:9257985-9260093 FORWARD LENGTH=702
Medicago Medtr2g026635.1 870 63.4 74.4 | pentatricopeptide (PPR) repeat protein | HC | chr2:9664816-9662405 | 20130731
Soybean Glyma09g01570.1 973 68.6 77.8  
LJGI gnl|LJGI|FS317486 1485 99.7 99.7 weakly similar to UniRef100_A7R299 Cluster: Chromosome undetermined scaffold_410, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_410, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0059959.1 length: 716 aa.
IPR002625 Smr protein/MutS2 C-terminal
method AccNumber shortName E-value location
HMMSmart SM00463 Small 1.3e-08 600-690
ProfileScan PS50828 SMR 13.162 603-687
IPR002885 Pentatricopeptide repeat
HMMPfam PF01535 PPR 0.082 251-273
282-311
461-488
HMMPfam PF13041 PPR_2 6.6e-13 175-218
314-363
386-433
HMMTigr TIGR00756 PPR: 0.00016 178-210
251-280
282-315
317-351
353-381
387-421
423-457
461-491
ProfileScan PS51375 PPR 5.503 175-209
210-244
280-314
245-279
315-349
350-384
385-419
421-455
456-490
557-591
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.3e-05 175-409
520-587
no_ID  
HMMPanther PTHR24015 FAMILY 4.6e-91 155-499
Seg seg seg NA 10-16
29-36
575-587
superfamily SSF48452 TPR-like 8.8e-08 177-486
Wolf-PSORT
Lj0g3v0059959.1	chlo 12, mito 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0059959.1