information on T3E15
(59661..60011)
Direction: +
Frame: 3
ORF
59034..60767 (Met: 59151 59184 59250 59304 59412 59448 59460 59490 59529 59649 59709 59715 59922 59970 60216 60315 60348 60393 60600 60627 59862 59870 59875)
NKFYDLLEGANNPLYDGYREGQSQLSLASRLVHNKAEYNMSEKLVDSVCEMFTNSLPEGN
QITTSHYQTEKLMRNLELPYHTIDVCQNNCMLFWKEDEKEDQYRFCGAQRWKPKDNRRRT
KLPYSHMWYLPIGDRLKRMYQRMYQSHKTVAAMRWHAEHQSKEGEMNHPSDAAEWRYFQE
LHPWFAEEPCNVYFGLCTDGFNRFGMSRNHSLWHVILTPYNLPPGMCMNTEYLFLTILNS
GPNHPRASLDVFLQPLIEELKELWSTGVDAYDVSLS*Y**AVLLLTISDFPAFSMLSGWT
THDKLSCPVCMESTKSFSLPNGRKTCWFDCHCRFLPHGHPSRRNRKDFVKGREVSSEYPP
ESLTGKQVYYEWLASVNPPKTKDVGGNGHEKKMLGYGKEHNWHKESILWELSYWKDLNLR
HIIDVMHTEKNFLDNIMNTLLRVKDKSKDNIMSRLDIEKFCSRPGLHIDSNGKAPFPTYS
LTDEAKQSLFQCVKHDVRFPDGYSSDLASCVDLENGKFSGMKSHDCHVFMERLLPFIFAE
LLDRNVHLALSGTVLTILFANIFLSNYLTCTYILGI
GenBank annotation
None
BLASTX cluster
58563..62361 cluster 21 22 hits for protein gene
BLASTN cluster
None
GENSCAN
58560..66103 gene model 17
Suboptimal exon
59040..59706 Intr Phase: 0 Score: 0.137
60068..60693 Intr Phase: 2 Score: 0.422
Grail
59056..59301 exon Phase: 1 Score: 50
59448..59842 exon Phase: 0 Score: 60
59970..60698 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
Acceptor |
59056 [0.001] (1) |
59059 [0.010] (1) |
59095 [0.185] (1) |
59100 [0.014] (0) |
59206 [0.160] (1) |
59209 [0.006] (1) |
59238 [0.006] (0) |
59295 [0.86N/0.084] (0) |
59320 [0.001] (1) |
59323 [0.007] (1) |
59445 [0.001] (0) |
59457 [0.011] (0) |
59469 [0.012] (0) |
59482 [0.003] (1) |
59545 [0.001] (1) |
59551 [0.003] (1) |
59725 [0.004] (1) |
59884 [0.022] (1) |
59903 [0.004] (2) |
59921 [0.001] (2) |
59932 [0.031] (1) |
59965 [0.133] (1) |
60038 [0.011] (2) |
60068 [0.012] (2) |
60074 [0.002] (2) |
60133 [0.167] (1) |
60285 [0.001] (0) |
60325 [0.014] (1) |
60433 [0.023] (1) |
60449 [0.002] (2) |
60487 [0.061] (1) |
60541 [0.86N/0.114] (1) |
60554 [0.003] (2) |
60574 [0.082] (1) |
60580 [0.002] (1) |
60598 [0.041] (1) |
60694 [0.002] (1) |
60763 [0.493] (1) |
Donor |
59058 [0.81N/0.026] (1) |
59301 [0.008] (1) |
59416 [0.005] (2) |
59584 [0.067] (2) |
59601 [0.92N/0.011] (1) |
59617 [0.74N/0.006] (2) |
59706 [0.86N/0.588] (1) |
59725 [0.004] (2) |
59842 [0.045] (2) |
60019 [0.009] (2) |
60164 [0.004] (0) |
60453 [0.93N/0.005] (1) |
60472 [0.86N] (2) |
60527 [0.003] (0) |
60543 [0.007] (1) |
60693 [1.00N/0.927] (1) |
60698 [0.202] (0) |
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