information on T3E15
(58965..60977)
Direction: +
Frame: 3
ORF
58704..60990 (Met: 58797 58836 58842 58935 59151 59184 59250 59304 59412 59448 59460 59490 59529 59649 59709 59715 59922 59970 60216 60315 60348 60393 60600 60627 60788 60889 59031 59036 59053 59862 59870 59875 60768 60854)
GKFHCPCSVCKNEKHIISGRRVNSHLFSQGFMPDYYVWYKHGKEMNMDIGTSTYTDRTYF
SLNYEEVGNVVEDPYVDMVNDAFNFNVGYDDNYHHDDSYQNVEEPVRNH**STTC*GANN
PLYDGYREGQSQLSLASRLVHNKAEYNMSEKLVDSVCEMFTNSLPEGNQITTSHYQTEKL
MRNLELPYHTIDVCQNNCMLFWKEDEKEDQYRFCGAQRWKPKDNRRRTKLPYSHMWYLPI
GDRLKRMYQRMYQSHKTVAAMRWHAEHQSKEGEMNHPSDAAEWRYFQELHPWFAEEPCNV
YFGLCTDGFNRFGMSRNHSLWHVILTPYNLPPGMCMNTEYLFLTILNSGPNHPRASLDVF
LQPLIEELKELWSTGVDAYDVSLS*Y**AVLLLTISDFPAFSMLSGWTTHDKLSCPVCME
STKSFSLPNGRKTCWFDCHCRFLPHGHPSRRNRKDFVKGREVSSEYPPESLTGKQVYYEW
LASVNPPKTKDVGGNGHEKKMLGYGKEHNWHKESILWELSYWKDLNLRHIIDVMHTEKNF
LDNIMNTLLRVKDKSKDNIMSRLDIEKFCSRPGLHIDSNGKAPFPTYSLTDEAKQSLFQC
VKHDVRFPDGYSSDLASCVDLENGKFSGMKSHDCHVFMERLLPFIFAELLDRNVHLALSG
TVLTILFANIFLSNYLTCTYILGI*IFPGPMFENFTDESRSNSQREHSFNHL*WKRFFHH
HFLMLWNTYLSISHTKLNWVALSNIGGCIHLRGFSKS
GenBank annotation
None
BLASTX cluster
58563..62361 cluster 21 22 hits for protein gene
BLASTN cluster
None
GENSCAN
58560..66103 gene model 17
Suboptimal exon
58792..59018 Intr Phase: 1 Score: 0.225
59040..59706 Intr Phase: 0 Score: 0.137
60068..60693 Intr Phase: 2 Score: 0.422
Grail
58797..59018 exon Phase: 0 Score: 69
59056..59301 exon Phase: 1 Score: 50
59448..59842 exon Phase: 0 Score: 60
59970..60698 exon Phase: 0 Score: 86
60894..61068 exon Phase: 0 Score: 64
Exon-Intron boundary candidatates
| Acceptor |
| 58727 [0.026] (2) |
58787 [0.002] (2) |
58824 [0.001] (0) |
58852 [0.011] (1) |
| 58900 [0.003] (1) |
58918 [0.007] (1) |
58921 [0.002] (1) |
58997 [0.017] (2) |
| 59004 [0.59N/0.059] (0) |
59056 [0.001] (1) |
59059 [0.010] (1) |
59095 [0.185] (1) |
| 59100 [0.014] (0) |
59206 [0.160] (1) |
59209 [0.006] (1) |
59238 [0.006] (0) |
| 59295 [0.86N/0.084] (0) |
59320 [0.001] (1) |
59323 [0.007] (1) |
59445 [0.001] (0) |
| 59457 [0.011] (0) |
59469 [0.012] (0) |
59482 [0.003] (1) |
59545 [0.001] (1) |
| 59551 [0.003] (1) |
59725 [0.004] (1) |
59884 [0.022] (1) |
59903 [0.004] (2) |
| 59921 [0.001] (2) |
59932 [0.031] (1) |
59965 [0.133] (1) |
60038 [0.011] (2) |
| 60068 [0.012] (2) |
60074 [0.002] (2) |
60133 [0.167] (1) |
60285 [0.001] (0) |
| 60325 [0.014] (1) |
60433 [0.023] (1) |
60449 [0.002] (2) |
60487 [0.061] (1) |
| 60541 [0.86N/0.114] (1) |
60554 [0.003] (2) |
60574 [0.082] (1) |
60580 [0.002] (1) |
| 60598 [0.041] (1) |
60694 [0.002] (1) |
60763 [0.493] (1) |
60772 [0.001] (1) |
| 60807 [0.034] (0) |
60956 [0.002] (2) |
| Donor |
| 58704 [1.00N/0.757] (1) |
58727 [0.006] (0) |
58758 [0.021] (1) |
58876 [0.020] (2) |
| 58905 [0.019] (1) |
58937 [0.004] (0) |
58966 [0.023] (2) |
59018 [0.021] (0) |
| 59058 [0.81N/0.026] (1) |
59301 [0.008] (1) |
59416 [0.005] (2) |
59584 [0.067] (2) |
| 59601 [0.92N/0.011] (1) |
59617 [0.74N/0.006] (2) |
59706 [0.86N/0.588] (1) |
59725 [0.004] (2) |
| 59842 [0.045] (2) |
60019 [0.009] (2) |
60164 [0.004] (0) |
60453 [0.93N/0.005] (1) |
| 60472 [0.86N] (2) |
60527 [0.003] (0) |
60543 [0.007] (1) |
60693 [1.00N/0.927] (1) |
| 60698 [0.202] (0) |
60852 [0.007] (1) |
60955 [0.059] (2) |
60976 [0.017] (2) |
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