information on T3E15
(58965..59093)
Direction: +
Frame: 3
ORF
58704..59861 (Met: 58797 58836 58842 58935 59151 59184 59250 59304 59412 59448 59460 59490 59529 59649 59709 59715 59031 59036 59053)
GKFHCPCSVCKNEKHIISGRRVNSHLFSQGFMPDYYVWYKHGKEMNMDIGTSTYTDRTYF
SLNYEEVGNVVEDPYVDMVNDAFNFNVGYDDNYHHDDSYQNVEEPVRNH**STTC*GANN
PLYDGYREGQSQLSLASRLVHNKAEYNMSEKLVDSVCEMFTNSLPEGNQITTSHYQTEKL
MRNLELPYHTIDVCQNNCMLFWKEDEKEDQYRFCGAQRWKPKDNRRRTKLPYSHMWYLPI
GDRLKRMYQRMYQSHKTVAAMRWHAEHQSKEGEMNHPSDAAEWRYFQELHPWFAEEPCNV
YFGLCTDGFNRFGMSRNHSLWHVILTPYNLPPGMCMNTEYLFLTILNSGPNHPRASLDVF
LQPLIEELKELWSTGVDAYDVSLS
GenBank annotation
None
BLASTX cluster
58563..62361 cluster 21 22 hits for protein gene
BLASTN cluster
None
GENSCAN
58560..66103 gene model 17
Suboptimal exon
58792..59018 Intr Phase: 1 Score: 0.225
59040..59706 Intr Phase: 0 Score: 0.137
Grail
58797..59018 exon Phase: 0 Score: 69
59056..59301 exon Phase: 1 Score: 50
59448..59842 exon Phase: 0 Score: 60
Exon-Intron boundary candidatates
Acceptor |
58727 [0.026] (2) |
58787 [0.002] (2) |
58824 [0.001] (0) |
58852 [0.011] (1) |
58900 [0.003] (1) |
58918 [0.007] (1) |
58921 [0.002] (1) |
58997 [0.017] (2) |
59004 [0.59N/0.059] (0) |
59056 [0.001] (1) |
59059 [0.010] (1) |
59095 [0.185] (1) |
59100 [0.014] (0) |
59206 [0.160] (1) |
59209 [0.006] (1) |
59238 [0.006] (0) |
59295 [0.86N/0.084] (0) |
59320 [0.001] (1) |
59323 [0.007] (1) |
59445 [0.001] (0) |
59457 [0.011] (0) |
59469 [0.012] (0) |
59482 [0.003] (1) |
59545 [0.001] (1) |
59551 [0.003] (1) |
59725 [0.004] (1) |
Donor |
58704 [1.00N/0.757] (1) |
58727 [0.006] (0) |
58758 [0.021] (1) |
58876 [0.020] (2) |
58905 [0.019] (1) |
58937 [0.004] (0) |
58966 [0.023] (2) |
59018 [0.021] (0) |
59058 [0.81N/0.026] (1) |
59301 [0.008] (1) |
59416 [0.005] (2) |
59584 [0.067] (2) |
59601 [0.92N/0.011] (1) |
59617 [0.74N/0.006] (2) |
59706 [0.86N/0.588] (1) |
59725 [0.004] (2) |
59842 [0.045] (2) |
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