information on T27D20
(49033..48863)
Direction: -
Frame: 1
ORF
49474..48836 (Met: 49459 49051)
GAKSKMSKQCLLSCFLFFCFFIPQLSFSCPQDQRQSLLEFKNLLIHNIKDNYTAFEELGT
WRPNSDCCKWLRVTCNASSPSKEVIDLNLFLLIPPGLVSSSILRPILRINSLVGLDVSFN
NIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIK
ELKNLQELILDENLIGGAIPSEIGKLENKFSNI
GenBank annotation
49459..46940 T27D20.9
BLASTX cluster
49324..47081 cluster 8 61 hits for protein gene
BLASTN cluster
None
GENSCAN
52495..46943 gene model 10
Suboptimal exon
49459..48865 Init Phase: 0 Score: 0.268
Grail
49178..48833 exon Phase: 2 Score: 88
49459..48833 exon Phase: 0 Score: 83
Exon-Intron boundary candidatates
Acceptor |
48916 [0.010] (0) |
48971 [0.93N/0.944] (2) |
48974 [0.002] (2) |
48988 [0.61N] (0) |
49037 [0.014] (2) |
49299 [0.146] (1) |
49327 [0.001] (0) |
49380 [0.003] (1) |
49477 [0.011] (0) |
Donor |
48865 [1.00N/0.954] (1) |
48958 [0.036] (1) |
49252 [0.96N/0.015] (1) |
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Entrance