information on T27D20
(48778..48503)
Direction: -
Frame: 1
ORF
48808..46943 (Met: 48790 48739 48601 48112 48103 47902 47893 47617 47590 47116 46966)
NVLPFKMLQGSLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNL
VNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEG
NNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWL
ADLKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSEN
NFSGSVPKSITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYFGGS
TSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSL
KGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIP
NIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLK
VLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGR
IPESPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWNAA
AIGCSCGFLIAVVFMSYNELWK
GenBank annotation
49459..46940 T27D20.9
BLASTX cluster
49324..47081 cluster 8 61 hits for protein gene
BLASTN cluster
None
GENSCAN
52495..46943 gene model 10
Suboptimal exon
48495..46943 Term Phase: 1 Score: 0.121
48780..46943 Term Phase: 1 Score: 0.294
48780..46944 Intr Phase: 1 Score: 0.103
48780..48511 Intr Phase: 1 Score: 0.144
Grail
48790..46940 exon Phase: 0 Score: 95
Exon-Intron boundary candidatates
Acceptor |
46974 [0.056] (1) |
46977 [0.001] (1) |
47010 [0.004] (1) |
47083 [0.097] (0) |
47162 [0.007] (2) |
47170 [0.002] (0) |
47193 [0.002] (1) |
47298 [0.004] (1) |
47302 [0.014] (0) |
47388 [0.002] (1) |
47433 [0.020] (1) |
47459 [0.321] (2) |
47496 [0.043] (1) |
47567 [0.013] (2) |
47712 [0.002] (1) |
47724 [0.001] (1) |
47747 [0.002] (2) |
47755 [0.023] (0) |
47757 [0.115] (1) |
47773 [0.002] (0) |
47793 [0.002] (1) |
47873 [0.002] (2) |
48006 [0.422] (1) |
48019 [0.001] (0) |
48078 [0.002] (1) |
48115 [0.080] (0) |
48142 [0.085] (0) |
48161 [0.015] (2) |
48193 [0.003] (0) |
48219 [0.002] (1) |
48227 [0.016] (2) |
48234 [0.141] (1) |
48251 [0.002] (2) |
48296 [0.214] (2) |
48360 [0.021] (1) |
48363 [0.86N/0.001] (1) |
48377 [0.011] (2) |
48403 [0.011] (0) |
48466 [0.007] (0) |
48472 [0.001] (0) |
48475 [0.147] (0) |
48510 [0.062] (1) |
48645 [0.045] (1) |
48742 [0.002] (0) |
48776 [0.001] (2) |
48780 [0.057] (1) |
Donor |
46944 [0.88N] (2) |
47002 [0.053] (1) |
47194 [0.88N/0.095] (1) |
47303 [0.009] (0) |
47369 [0.81N/0.053] (0) |
47684 [0.020] (0) |
47725 [0.004] (1) |
47756 [0.005] (0) |
47890 [0.003] (1) |
47905 [0.069] (1) |
48007 [0.011] (1) |
48110 [0.088] (0) |
48116 [0.070] (0) |
48148 [0.006] (1) |
48421 [0.74N/0.022] (1) |
48467 [0.228] (0) |
48511 [0.118] (1) |
48705 [0.016] (2) |
[help]
Entrance