information on T27D20
(17082..17228)
Direction: +
Frame: 3
ORF
16530..17984 (Met: 16632 16716 16728 16962 16977 16992 17043 17163 17166 17265 17286 17334 17343 17454 17577 17586 17640 17721 17796 17928 17955 17958)
SNLKTYQLARDRVRRTIRPPAKLTDYTQFAFALVMAEEVESEEPVCFHDVKEDKDWEKWH
GGMIEEMDSLLKNATWDIVDKPKNQKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHR
EGIDYQEVFSPVVKHTSIRILLSLMVKEDMELEQMDVKTAFLHGELDQTLFMEQPEGFEV
NPELDQVCLLKKSLYGLKQAPRQWNKRFNAFMMDQKFSRSVSDSCVYVKEVSNGECVYLL
LYVDDMLLAAKSMTEIKKLKKVLSREFEMKDMGAASRKLGIDIIRNRSEGTLCLSQTSYL
ERVIQKFRMDGAKVVNTPIGAHFKLSSVHNDDERVGSEKVPYSSVVGSLMYAMIGTRPDI
AYAIGLVSRFMSKQGEVHWTAVKWLLRYLKWSIGLNLMYTKGFDFKVQGYCDSDHAADLD
KNMSISGYVFTVGGNIVSWKSCLQPVVALSTTEAEYIALTKAVKEAMWIRNLLDDMMLGT
ETAEV
GenBank annotation
14338..18209 T27D20.5
BLASTX cluster
None
BLASTN cluster
None
GENSCAN
14338..17984 gene model 4
14338..17984 gene model 4
Suboptimal exon
16632..17984 Sngl Phase: 0 Score: 0.481
Grail
16342..16529 exon Phase: 1 Score: 82
16551..17066 exon Phase: 0 Score: 72
17454..17987 exon Phase: 0 Score: 89
Exon-Intron boundary candidatates
Acceptor |
16542 [0.001] (0) |
16551 [0.015] (0) |
16559 [0.003] (2) |
16565 [0.014] (2) |
16614 [0.002] (0) |
16630 [0.003] (1) |
16639 [0.033] (1) |
16654 [0.002] (1) |
16683 [0.020] (0) |
16821 [0.001] (0) |
16894 [0.001] (1) |
16992 [0.031] (0) |
17127 [0.93N/0.255] (0) |
17218 [0.002] (1) |
17278 [0.437] (1) |
17293 [0.011] (1) |
17324 [0.006] (2) |
17340 [0.003] (0) |
17360 [0.004] (2) |
17374 [0.001] (1) |
17390 [0.006] (2) |
17418 [0.004] (0) |
17445 [0.005] (0) |
17453 [0.004] (2) |
17512 [0.007] (1) |
17536 [0.085] (1) |
17573 [0.003] (2) |
17600 [0.001] (2) |
17629 [0.006] (1) |
17633 [0.001] (2) |
17636 [0.314] (2) |
17734 [0.003] (1) |
17749 [0.76N/0.037] (1) |
17754 [0.96N/0.752] (0) |
17770 [0.079] (1) |
17782 [0.012] (1) |
17807 [0.001] (2) |
17824 [0.195] (1) |
Donor |
16565 [0.019] (0) |
16661 [0.055] (0) |
16861 [0.180] (2) |
16997 [0.005] (0) |
17066 [1.00N/0.757] (0) |
17087 [0.94N/0.106] (0) |
17189 [0.045] (0) |
17219 [1.00N/0.918] (0) |
17229 [0.033] (1) |
17283 [0.011] (1) |
17435 [0.012] (0) |
17468 [0.011] (0) |
17578 [0.140] (2) |
17635 [0.011] (2) |
17680 [0.019] (2) |
17689 [1.00N/0.875] (2) |
17701 [0.085] (2) |
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