information on T27D20
(16524..18206)
Direction: +
Frame: 3
ORF
16056..18206 (Met: 16632 16716 16728 16962 16977 16992 17043 17163 17166 17265 17286 17334 17343 17454 17577 17586 17640 17721 17796 17928 17955 17958 18025 18034 16527 16556 16627 17985 17990 18193)
AETAATDAYLINRSPASAVDHNVPEQLWLNREPGYKHLRRFSSIAYVHQEQGKLKPRVLK
GVFLGYPQGTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGSKDEDETVTQESQIEIE
TPPKSELETQNQVQGGATQVQLNDSEDEYNDVEGVVT*QSEDLSVG*IGSEEQLDHLQNL
LTILSLLLL*MAEEVESEEPVCFHDVKEDKDWEKWHGGMIEEMDSLLKNATWDIVDKPKN
QKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHREGIDYQEVFSPVVKHTSIRILLSL
MVKEDMELEQMDVKTAFLHGELDQTLFMEQPEGFEVNPELDQVCLLKKSLYGLKQAPRQW
NKRFNAFMMDQKFSRSVSDSCVYVKEVSNGECVYLLLYVDDMLLAAKSMTEIKKLKKVLS
REFEMKDMGAASRKLGIDIIRNRSEGTLCLSQTSYLERVIQKFRMDGAKVVNTPIGAHFK
LSSVHNDDERVGSEKVPYSSVVGSLMYAMIGTRPDIAYAIGLVSRFMSKQGEVHWTAVKW
LLRYLKWSIGLNLMYTKGFDFKVQGYCDSDHAADLDKNMSISGYVFTVGGNIVSWKSCLQ
PVVALSTTEAEYIALTKAVKEAMWIRNLLDDMMLGTETAEV**HSLHYVYQRTMLFMKEQ
STLVRSIISSETLLKLVKSKFIRFTRLGIQLICSQKVYQFRSLKQHWSS*LLR
GenBank annotation
14338..18209 T27D20.5
BLASTX cluster
None
BLASTN cluster
None
GENSCAN
14338..17984 gene model 4
14338..17984 gene model 4
Suboptimal exon
16094..16526 Term Phase: 2 Score: 0.538
16632..17984 Sngl Phase: 0 Score: 0.481
Grail
16069..16282 exon Phase: 1 Score: 49
16342..16529 exon Phase: 1 Score: 82
16551..17066 exon Phase: 0 Score: 72
17454..17987 exon Phase: 0 Score: 89
18077..18209 exon Phase: 2 Score: 51
Exon-Intron boundary candidatates
| Acceptor |
| 16094 [0.708] (2) |
16111 [0.005] (1) |
16129 [0.002] (1) |
16134 [0.007] (0) |
| 16189 [0.003] (1) |
16313 [0.003] (2) |
16316 [0.94N/0.079] (2) |
16336 [0.032] (1) |
| 16342 [0.005] (1) |
16350 [0.024] (0) |
16359 [0.020] (0) |
16363 [0.004] (1) |
| 16395 [0.005] (0) |
16446 [0.002] (0) |
16516 [0.003] (1) |
16522 [0.008] (1) |
| 16542 [0.001] (0) |
16551 [0.015] (0) |
16559 [0.003] (2) |
16565 [0.014] (2) |
| 16614 [0.002] (0) |
16630 [0.003] (1) |
16639 [0.033] (1) |
16654 [0.002] (1) |
| 16683 [0.020] (0) |
16821 [0.001] (0) |
16894 [0.001] (1) |
16992 [0.031] (0) |
| 17127 [0.93N/0.255] (0) |
17218 [0.002] (1) |
17278 [0.437] (1) |
17293 [0.011] (1) |
| 17324 [0.006] (2) |
17340 [0.003] (0) |
17360 [0.004] (2) |
17374 [0.001] (1) |
| 17390 [0.006] (2) |
17418 [0.004] (0) |
17445 [0.005] (0) |
17453 [0.004] (2) |
| 17512 [0.007] (1) |
17536 [0.085] (1) |
17573 [0.003] (2) |
17600 [0.001] (2) |
| 17629 [0.006] (1) |
17633 [0.001] (2) |
17636 [0.314] (2) |
17734 [0.003] (1) |
| 17749 [0.76N/0.037] (1) |
17754 [0.96N/0.752] (0) |
17770 [0.079] (1) |
17782 [0.012] (1) |
| 17807 [0.001] (2) |
17824 [0.195] (1) |
18077 [0.027] (2) |
18091 [0.002] (1) |
| 18128 [0.001] (2) |
18178 [0.004] (1) |
18181 [0.022] (1) |
18198 [0.006] (0) |
| 18206 [0.061] (2) |
| Donor |
| 16093 [0.013] (2) |
16209 [0.92N] (1) |
16269 [0.204] (1) |
16277 [1.00N/0.194] (0) |
| 16282 [0.043] (2) |
16451 [0.044] (0) |
16458 [0.014] (1) |
16565 [0.019] (0) |
| 16661 [0.055] (0) |
16861 [0.180] (2) |
16997 [0.005] (0) |
17066 [1.00N/0.757] (0) |
| 17087 [0.94N/0.106] (0) |
17189 [0.045] (0) |
17219 [1.00N/0.918] (0) |
17229 [0.033] (1) |
| 17283 [0.011] (1) |
17435 [0.012] (0) |
17468 [0.011] (0) |
17578 [0.140] (2) |
| 17635 [0.011] (2) |
17680 [0.019] (2) |
17689 [1.00N/0.875] (2) |
17701 [0.085] (2) |
| 17998 [0.004] (2) |
18054 [0.85N/0.062] (1) |
18153 [0.129] (1) |
18205 [0.88N/0.453] (2) |
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