information on T27D20
(15696..16100)
Direction: +
Frame: 3
ORF
15534..16526 (Met: 15606 15774 15987 16002 16020 16075 16053 16058 16084)
RSYKANRLIEKKEFKDLDFCEHYVMGKSKKLSFNVGKHVTEDILGYVHADLWGSPNVTPS
ISGKQYFLSIIDDKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFC
NNRFNDYCAKTGIERHRTCTYTPQQNGVTKRMNRTIMEKVRCMLDESGLEETF**LQQQM
HT*NRSPASAVDHNVPEQLWLNREPGYKHLRRFSSIAYVHQEQGKLKPRVLKGVFLGYPQ
GTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGSKDEDETVTQESQIEIETPPKSELE
TQNQVQGGATQVQLNDSEDEYNDVEGVVT
GenBank annotation
14338..18209 T27D20.5
BLASTX cluster
None
BLASTN cluster
None
GENSCAN
14338..17984 gene model 4
Suboptimal exon
15655..16015 Intr Phase: 1 Score: 0.359
16094..16526 Term Phase: 2 Score: 0.538
Grail
15554..15720 exon Phase: 2 Score: 89
15774..16010 exon Phase: 0 Score: 55
16069..16282 exon Phase: 1 Score: 49
16342..16529 exon Phase: 1 Score: 82
Exon-Intron boundary candidatates
Acceptor |
15554 [0.002] (2) |
15655 [0.86N/0.035] (1) |
15748 [0.017] (1) |
15810 [0.001] (0) |
15825 [0.003] (0) |
15835 [0.001] (1) |
15902 [0.93N/0.576] (2) |
15924 [0.002] (0) |
15938 [0.001] (2) |
16036 [0.050] (1) |
16094 [0.708] (2) |
16111 [0.005] (1) |
16129 [0.002] (1) |
16134 [0.007] (0) |
16189 [0.003] (1) |
16313 [0.003] (2) |
16316 [0.94N/0.079] (2) |
16336 [0.032] (1) |
16342 [0.005] (1) |
16350 [0.024] (0) |
16359 [0.020] (0) |
16363 [0.004] (1) |
16395 [0.005] (0) |
16446 [0.002] (0) |
16516 [0.003] (1) |
16522 [0.008] (1) |
Donor |
15639 [0.012] (1) |
15701 [0.74N] (0) |
15720 [1.00N/0.530] (1) |
15854 [0.74N/0.132] (0) |
16010 [0.222] (0) |
16015 [0.014] (2) |
16093 [0.013] (2) |
16209 [0.92N] (1) |
16269 [0.204] (1) |
16277 [1.00N/0.194] (0) |
16282 [0.043] (2) |
16451 [0.044] (0) |
16458 [0.014] (1) |
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Entrance