BLASTX alignment cluster 1    (8..1310)

Local alignments in this cluster

gi|3513745[fasta] (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana]
Length 1662 aa
position (link: detail on the area) subject position direction score
63822..63610 (1362..1432) - 1167
63606..63478 (1435..1477) - 59
63422..63291 (1515..1558) - 40
1516..1310 (1..69) - 217
1331..1185 (63..111) - 172
1179..706 (853..1010) - 579
711..628 (1015..1042) - 122
643..317 (1038..1146) - 391
333..232 (1142..1175) - 132
295..5 (1155..1251) - 327

gi|2708743[fasta] (AC003952) putative Tal-1-like reverse transcriptase [Arabidopsis thaliana]
Length 1365 aa
position (link: detail on the area) subject position direction score
63942..63478 (1005..1159) - 51
63473..63438 (1177..1188) - 38
63380..63171 (1206..1275) - 132
63170..62928 (1280..1360) - 239
1179..727 (470..620) - 402
711..610 (632..665) - 85
622..317 (662..763) - 177
336..232 (758..792) - 83
247..2 (788..869) - 230

gi|2213608[fasta] (AC000103) F21J9.2 [Arabidopsis thaliana]
Length 1048 aa
position (link: detail on the area) subject position direction score
63936..63721 (974..1045) - 282
1191..730 (433..586) - 381
711..643 (599..621) - 86
613..350 (632..719) - 175
336..232 (725..759) - 83
247..2 (755..836) - 228

gi|2583130[fasta] (AC002387) putative reverse transcriptase [Arabidopsis thaliana]
Length 1374 aa
position (link: detail on the area) subject position direction score
63942..63616 (1014..1122) - 145
63594..63478 (1131..1169) - 88
1191..727 (467..621) - 402
711..610 (633..666) - 83
622..326 (663..761) - 180
336..232 (759..793) - 72
247..5 (789..869) - 206

gi|2618693[fasta] (AC002510) putative zinc-finger protein [Arabidopsis thaliana]
Length 1094 aa
position (link: detail on the area) subject position direction score
63945..63475 (734..890) - 229
63386..63279 (933..968) - 104
63170..62928 (1009..1089) - 194
1179..727 (200..350) - 359
711..610 (362..395) - 89
622..323 (392..491) - 184
336..232 (488..522) - 75
235..2 (522..599) - 182

show all (27) hits

   gi|3377824
   gi|2129709|pir||S65812
   gi|3746069
   gi|2244915|gnl|PID|e327476
   gi|3193294
   gi|2129710|pir||S65821
   gi|976280
   gi|3461840
   gi|976174
   gi|2129713|pir||S65816
   gi|2129714|pir||S65819
   gi|976176
   gi|2129715|pir||S65817
   gi|976178
   gi|2146771|pir||S65814
   gi|1402881|gnl|PID|e248476
   gi|2129711|pir||S65818
   gi|976169
   gi|3327392
   gi|3892061
   gi|976171
   gi|2129712|pir||S65820

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