information on T25K17
(86338..88285)
Direction: +
Frame: 1
ORF
86308..88525 (Met: 86317 86323 86386 86404 86413 86491 86506 86521 86721 86880 86923 87012 87252 87284 87323 87419 87533 87620 87776 87800 87842 87863 87893 87905 87983 88037 88100 88121 88130 88187 88190 86629 86661 86696 86701 86784 86789 86854 86892 86918 87004 87024 87044 87058 87084 87128 87247 87258 87656 87661 87690 87704 87718 87735)
STAMAMEQRPKTKIVCTLGPASRSVPMVEKLLMAGMSVARFNFSHGSYEYHQETLDNLRQ
AMLNTGMLCAVMLDTKVNLIKLVICAFLCLYNNAIEAFSFDLGSVHA*LIVSLSFYK*HV
LSDWLFPC**TLVLAMFKSCELWYNLWHGTLFPVRA**NICGTCLLVTETKWRTDVVC*Q
NINTKLMHHG*RLLPLSS*MKITISLKYLLQILTLWSVTWLSGNES*KMWNV*WLKVS*H
SS*VLLLIIS*VIDLYVLGDPFGF*NYGNDFCICLAGTRDSNRVLKGWETYPAQTRPRNH
HFN*MT*GDEKTICMSYKKLAQDVNPGMVILCADGTISLKVLSCDKEKGTVRCRCENTSM
LGERKNVNLPGVVVDLPTLTEKDKQDILEWGVPNQIDMIALSFVRKGSDLVQVRKLLGKH
AKTILLMSKVHIYIHHSN**HISILRFL*CYF*LSG*TKKV*NFDDILINSDAFMIARGD
LGMEIPIEKIFLAQKVMIYKCNFMGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGT
DCVMLSGETAAGAYPELAVRTMAKICVEAESTLDYGDIFKRIMLHAAVPMSPMESLASSA
VRTATSSRATLMMVLTRGGSTARLVAKYRPGIPILSVVVPEITSDSFDWACSNEAPARHS
LIYRGLVPVLYAGSARASIDESTEETLEFASEYGKKKQLCKTGDSVVALFRTGNAIVIKI
LTVK
GenBank annotation
None
BLASTX cluster
86317..88525 cluster 16 57 hits for protein gene
BLASTN cluster
None
GENSCAN
86317..88525 gene model 20
Grail
86317..86619 exon Phase: 0 Score: 86
86776..86847 exon Phase: 0 Score: 21
Exon-Intron boundary candidatates
| Acceptor |
| 86308 [0.004] (0) |
86332 [0.243] (0) |
86464 [0.024] (0) |
86488 [0.036] (0) |
| 86776 [0.075] (0) |
86792 [0.002] (1) |
86825 [0.064] (1) |
86857 [0.001] (0) |
| 86862 [0.006] (2) |
87039 [0.001] (2) |
87043 [0.001] (0) |
87167 [1.00N/0.984] (1) |
| 87174 [0.009] (2) |
87197 [0.003] (1) |
87263 [0.002] (1) |
87321 [0.005] (2) |
| 87362 [0.002] (1) |
87386 [0.001] (1) |
87556 [0.186] (0) |
87561 [0.016] (2) |
| 87629 [0.002] (1) |
87683 [0.002] (1) |
87716 [0.95N/0.914] (1) |
87732 [0.005] (2) |
| 87738 [0.001] (2) |
87836 [0.054] (1) |
87885 [0.004] (2) |
87991 [0.002] (0) |
| 88062 [0.005] (2) |
88204 [0.068] (0) |
88309 [0.023] (0) |
88353 [0.002] (2) |
| 88491 [0.019] (2) |
| Donor |
| 86535 [1.00N/0.960] (0) |
86743 [0.005] (1) |
86760 [0.242] (0) |
86803 [0.037] (1) |
| 86972 [0.022] (2) |
86992 [0.047] (1) |
87325 [0.004] (1) |
87344 [0.029] (2) |
| 87361 [0.042] (1) |
87391 [0.004] (1) |
87404 [0.003] (2) |
87560 [0.069] (2) |
| 87571 [0.005] (1) |
87628 [1.00N/0.804] (1) |
87788 [0.005] (2) |
88153 [0.009] (1) |
| 88225 [0.014] (1) |
88257 [0.005] (0) |
88362 [0.013] (0) |
88422 [0.019] (0) |
| 88428 [0.014] (0) |
88433 [0.049] (2) |
88490 [0.93N/0.904] (2) |
88524 [0.74N/0.003] (0) |
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