information on T25K17
(84861..84962)
Direction: +
Frame: 3
ORF
82143..85280 (Met: 82188 82209 82455 82512 82545 82551 82704 82725 82746 82773 82845 83085 83178 83214 83268 83307 83346 83550 83676 83946 84090 84498 84582 84672 84771 84945 84981 85080 85143 85170 85191)
SSLIPLINIQTIPFSMDSESELMISLISQLLSILGGGEDTHTPQLKSKLIALTCQLISLV
NSLDLDSQPEPESKLKSLIKQIIYVSNSVSEPGPESQSVSVVTKMISIIGSIDFDLKESE
PELMSLTSQIFALIMAMDEESELFSLLSEVASLVQTEEQKLINNQQVPPLTTEEEEKDDL
IYGYTDDMNWESELMFYIISKMISTLRGEDMCQEVARDFIAYANQLIPLIESLDMDSNSE
PKQEPKITSLVRQIISLSKVVSGPESQLVSLVTRIISITSSTDLDPTESQWRLTSVTYKI
SRILKEIKDSEDSEMASLINQIHDLVDAEEGRKPESRLISSITQLMSHINSWSFYSGMDP
KIISLIIRIIYLVRSMDLDSQTKPKSELMSLVTQTIAVYNSMDLDSQPRPLRKVVSVFSQ
YGFDVNSTVSDSESDSSENYVSHIKDSLKLEPEPELISFIHRIGSLVISMNPNWEKLISF
CPQFEVILSDDGKFQVEEGRLSKNQLSDDIPMKWNCLQVNWNLLKLHAGEKDFTHFRCRG
CNGDNHKENEKAPLEVKHPLHPKHPLQLVLSQSSGGRTRECYCCDEDLLHIFYCCLACNF
SMNVACTKKPAVLYRNHPRWHEHTLALFPRQASLTCNLCALADSSSPIYMCPPCDFVVHL
RCTGLPRVIKISRHLHRISFTFSFDRGDLSCSVCRRKIDEDYGGYTCIKDGCSYAAHSKC
ATQKNVWDGIELEGEPEEVEEEVVDPFVTISDGVIQHFGHPQHHLRLDENTSRDYDEDKL
CQACVMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLTLVNSDGAINVRKECAA
CPWMCTTGFFYECSKEDFQLHVQCANLSEPLVHESHMHPLFLTSKPGERRLCSACKESYF
SVTRETFNCIECDFALCFRCATLPQKVRYKHDKHMLTLSYGEETSTMTYWCEVCERNLNP
KERFYKCDEYCSITLHIECMLGVALYIRPGSSWICFNNKKMYVLPNNHHMSRPRCFMCKK
RCPQKIVFKYDEVIFCTQKCRGKYRY
GenBank annotation
None
BLASTX cluster
80428..85667 cluster 15 19 hits for protein gene
BLASTN cluster
None
GENSCAN
82188..85667 gene model 19
Suboptimal exon
82188..85228 Init Phase: 0 Score: 0.107
82188..85238 Init Phase: 0 Score: 0.313
Grail
82188..83023 exon Phase: 0 Score: 86
83085..83384 exon Phase: 0 Score: 85
83440..83696 exon Phase: 1 Score: 50
83987..84528 exon Phase: 2 Score: 67
84582..84765 exon Phase: 0 Score: 44
84899..84925 exon Phase: 2 Score: 20
Exon-Intron boundary candidatates
Acceptor |
82246 [0.88N/0.422] (1) |
82347 [0.053] (0) |
82386 [0.021] (0) |
82400 [0.032] (2) |
82414 [0.092] (1) |
82420 [0.134] (1) |
82480 [0.026] (1) |
82494 [0.012] (0) |
82501 [0.003] (1) |
82590 [0.001] (0) |
82598 [0.005] (2) |
82608 [0.009] (0) |
82763 [0.001] (2) |
82765 [0.002] (1) |
82785 [0.001] (0) |
82861 [0.081] (1) |
82872 [0.013] (0) |
82936 [0.012] (1) |
82982 [0.021] (2) |
82990 [0.009] (1) |
83128 [0.69N/0.019] (1) |
83212 [0.88N/0.354] (1) |
83264 [0.65N/0.058] (2) |
83286 [0.315] (0) |
83364 [0.008] (0) |
83403 [0.006] (0) |
83428 [0.87N/0.111] (1) |
83440 [0.023] (1) |
83479 [0.001] (1) |
83533 [0.024] (1) |
83599 [0.001] (1) |
83638 [0.001] (1) |
83697 [0.016] (0) |
83718 [0.001] (0) |
83728 [0.160] (1) |
83761 [0.003] (1) |
83956 [0.587] (1) |
83967 [0.002] (0) |
83970 [0.029] (0) |
83974 [0.006] (1) |
83987 [0.041] (2) |
84032 [0.003] (2) |
84036 [0.035] (0) |
84205 [0.86N] (1) |
84218 [0.035] (2) |
84230 [0.736] (2) |
84238 [0.009] (1) |
84704 [0.198] (2) |
84720 [0.118] (0) |
84732 [0.033] (0) |
84802 [0.003] (1) |
84899 [0.87N/0.025] (2) |
84921 [0.054] (0) |
85106 [0.037] (2) |
85265 [0.078] (2) |
Donor |
82436 [0.015] (0) |
82445 [0.050] (0) |
82764 [0.006] (1) |
82919 [0.069] (0) |
82946 [0.004] (0) |
83023 [1.00N/0.588] (2) |
83258 [0.007] (0) |
83381 [0.137] (0) |
83401 [0.030] (2) |
83414 [0.042] (0) |
83451 [0.006] (1) |
83696 [0.96N/0.934] (0) |
84171 [0.74N/0.066] (1) |
84280 [0.005] (2) |
84513 [0.88N/0.030] (1) |
84528 [0.012] (1) |
84593 [1.00N/0.066] (0) |
84641 [0.008] (0) |
84835 [0.004] (2) |
84920 [0.016] (0) |
84991 [0.006] (2) |
85077 [0.023] (1) |
85110 [0.018] (1) |
85144 [0.74N/0.042] (2) |
85194 [0.055] (1) |
85228 [0.044] (2) |
85238 [0.84N/0.007] (0) |
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