information on T25K17
(65359..65439)
Direction: +
Frame: 1
ORF
64915..65802 (Met: 64930 64963)
VSPLTMPVVLLRRSSPMDPTLSSESSILVSCLFPTLLCFRALILSISLKLLLLSILGIWP
ESESFRETPEAKPIPSSWNGKCVGGEDFDPSVHCNRKLIGARFYLRGFEETYGTIDFTRD
PEYRSPRDYLGHGTHTASTAVGSVVRNVSGFFGLGRGTARGGAPLARLAVFKTCWGKDLE
GVCTEADILAAFDDAIHDGVHVISASFGYSPPLSPFFESSADIGAFHAAERGISVVFSTG
NDGPDPGVVQNVAPWAVSVAASTVDRSFPTRIVIDGSFTLTVLPLNPVVRVKLLKD
GenBank annotation
64518..67571 T25K17.140
BLASTX cluster
64518..67568 cluster 11 14 hits for protein gene
BLASTN cluster
None
GENSCAN
62608..67568 gene model 14
Suboptimal exon
65034..65757 Intr Phase: 2 Score: 0.377
Grail
65112..65805 exon Phase: 2 Score: 90
Exon-Intron boundary candidatates
Acceptor |
64915 [0.521] (0) |
65034 [0.123] (2) |
65084 [0.97N/0.806] (1) |
65112 [0.644] (2) |
65232 [0.074] (2) |
65243 [0.002] (1) |
65486 [0.072] (1) |
65569 [0.001] (0) |
65579 [0.017] (1) |
65600 [0.007] (1) |
65665 [0.026] (0) |
65696 [0.022] (1) |
65780 [0.001] (1) |
Donor |
64998 [0.059] (0) |
65187 [0.004] (0) |
65200 [0.011] (1) |
65455 [0.018] (1) |
65517 [0.033] (0) |
65740 [0.88N/0.043] (1) |
65757 [1.00N/0.047] (0) |
65778 [0.006] (0) |
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