information on T10M13
(28457..30801)
Direction: +
Frame: 2
ORF
28448..30837 (Met: 28481 28628 28943 28994 29083 29518 29628 29661 29709 29715 29783 29830 29848 29988 30092 30226 30250 30331 30379 30412 30448 30736 28724 28777 28875 29024 29137 29151 29171 29242 29283 29315 29329 29400 29462 29614 29772 29807 29959 30018 30107 30334 30339 30347 30541 30555 30560 30565 30582 30605 30628 30642 30716)
ALGNEFYNSLLMNLLLFSEVYFKAPSKGRPSTIREVKASHIGQLVRISGIVTRCSDVKPL
MAVAVYTCEDCGHEIYQVQLCFCQIVVSFLFC*TNSDYFLLHVKSGSYI*SSCLCLSVLL
VAVVLIVKPGILFFSSEHQSF*FQEVLFLVNECHLCECTDIKLMSKKSLSCRPRCKSWLN
MFPKGIFRGL*VHLRGELTRKVPFLDLSLMLLLESICSTFGINSSVA*IVQ*SCCSA*AY
AEQLLIKRIFFSNVVLGLYL*IVISASFTIVQL*FLLNFLKPL*ITR*LLSSQGFFFPFL
TLGLRHFELA*ADTYLEATSVTHFKKKYEE*RCYTFTLTKHSDLVTYSMFFCICLRYKAA
FVCAQYQKASLYLFHYDLQI*FRKMRKNRLHVWLRMVTYTISCRDPWPLRFMDMKILRKL
CFSFLWVLLTGN*DGMKVNFPVL*YSGKISMILLSIMIKSKDCTLIRKQLLALVHLRLYC
FTYFHTVSAVFID*YGALLFTNMFSHSRAHCT*GTHFICEDLKTIHSLIIFCRLEEMCIS
V*GDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGGALVRDN
ALLLWIYFRKYDVRAM**V*QSLSQVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSI
AKAGITTSLNARTAVLAAANPAW*ELS***THEC*DHCYHY*YVSLCL*GKI*CEELQLK
TLIFHRPFFQDSICCG*LDRADMDSDLELAKHVLHVHQTEESPALGFEPLEPNILR
GenBank annotation
27749..31562 T10M13.7
BLASTX cluster
27870..31559 cluster 5 54 hits for protein gene
BLASTN cluster
None
GENSCAN
27749..39192 gene model 7
Suboptimal exon
28549..28678 Intr Phase: 2 Score: 0.135
28585..28678 Intr Phase: 2 Score: 0.187
28766..28888 Intr Phase: 0 Score: 0.218
28766..28900 Intr Phase: 0 Score: 0.132
Grail
None
Exon-Intron boundary candidatates
| Acceptor |
| 28455 [0.001] (1) |
28501 [0.90N/0.654] (2) |
28505 [0.004] (0) |
28518 [0.94N/0.668] (1) |
| 28529 [0.031] (0) |
28534 [0.061] (2) |
28549 [0.004] (2) |
28766 [0.87N/0.217] (0) |
| 28770 [0.001] (1) |
28780 [0.001] (2) |
28813 [0.001] (2) |
28831 [0.006] (2) |
| 28836 [0.001] (1) |
28856 [0.003] (0) |
28886 [0.023] (0) |
28969 [0.96N/0.964] (2) |
| 29127 [0.028] (1) |
29140 [0.006] (2) |
29146 [0.001] (2) |
29245 [0.009] (2) |
| 29260 [0.011] (2) |
29318 [0.87N/0.410] (0) |
29328 [0.050] (1) |
29349 [0.93N/0.093] (1) |
| 29384 [0.025] (0) |
29409 [0.008] (1) |
29541 [0.004] (1) |
29552 [0.003] (0) |
| 29611 [1.00N/0.648] (2) |
29624 [0.215] (0) |
29628 [0.003] (1) |
29642 [0.046] (0) |
| 29767 [0.012] (2) |
29857 [0.56N/0.010] (2) |
29887 [0.003] (2) |
29900 [0.001] (0) |
| 29939 [0.032] (0) |
29996 [0.006] (0) |
30082 [1.00N/0.995] (2) |
30087 [0.238] (1) |
| 30089 [0.013] (0) |
30171 [0.001] (1) |
30188 [0.012] (0) |
30263 [0.001] (0) |
| 30342 [0.010] (1) |
30345 [0.032] (1) |
30367 [1.00N/0.518] (2) |
30425 [0.007] (0) |
| 30445 [0.003] (2) |
30457 [0.002] (2) |
30512 [0.002] (0) |
30527 [0.015] (0) |
| 30633 [0.87N/0.789] (1) |
30639 [0.020] (1) |
30654 [0.001] (1) |
30662 [0.003] (0) |
| 30725 [0.006] (0) |
30744 [0.006] (1) |
30784 [0.004] (2) |
30788 [0.004] (0) |
| Donor |
| 28552 [0.013] (0) |
28592 [0.009] (1) |
28678 [1.00N/0.928] (0) |
28702 [0.009] (0) |
| 28888 [0.005] (0) |
28900 [0.014] (0) |
29018 [0.091] (1) |
29058 [1.00N/0.828] (2) |
| 29317 [0.010] (0) |
29327 [0.013] (1) |
29427 [0.96N/0.022] (2) |
29460 [0.74N/0.067] (2) |
| 29766 [0.74N] (2) |
29788 [1.00N/0.414] (0) |
30133 [0.007] (0) |
30193 [0.096] (0) |
| 30273 [0.96N/0.260] (2) |
30321 [0.061] (2) |
30462 [0.158] (2) |
30539 [1.00N/0.986] (1) |
| 30543 [0.004] (2) |
30836 [1.00N/0.990] (1) |
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