information on L73G19
(41982..41566)
Direction: -
Frame: 3
ORF
42441..41362 (Met: 42324 41769 41622 41607 41439)
RVLLLSKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRDPYENANIALPD
HCPESKKQNQKQSIVRYKSSRITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTI
YLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILA
NTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPN
YIAGTSSVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKC
LVWFEEASVNSCLVTGGDVLDKNGLHERQRWFNVYMLLGFFVLYRVLCFLVLLKRVSGSK
R*
GenBank annotation
None
BLASTX cluster
42444..41362 cluster 10 75 hits for protein gene
BLASTN cluster
None
GENSCAN
42366..38428 gene model 9
Suboptimal exon
42324..41496 Init Phase: 0 Score: 0.277
Grail
41769..41359 exon Phase: 0 Score: 85
42107..41359 exon Phase: 1 Score: 40
Exon-Intron boundary candidatates
Acceptor |
41380 [0.030] (2) |
41429 [0.004] (1) |
41495 [0.002] (1) |
41512 [0.002] (2) |
41648 [0.003] (1) |
41831 [0.69N/0.457] (1) |
42049 [0.002] (2) |
42092 [0.250] (1) |
42107 [0.004] (1) |
42172 [0.344] (2) |
42208 [0.001] (2) |
42266 [0.015] (1) |
42309 [0.012] (0) |
42345 [0.007] (0) |
42366 [0.002] (0) |
Donor |
41429 [0.024] (2) |
41435 [0.003] (2) |
41453 [0.049] (2) |
41456 [0.81N/0.388] (2) |
41496 [0.004] (1) |
41537 [0.021] (2) |
41542 [0.007] (0) |
41600 [0.012] (2) |
41621 [0.005] (2) |
41667 [0.008] (1) |
41791 [0.045] (0) |
42173 [0.018] (2) |
42252 [0.81N/0.050] (1) |
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