information on F19F18
(79687..79776)
Direction: +
Frame: 1
ORF
78580..79947 (Met: 78652 78730 78829 78979 79120 79162 79225 79363 79390 79618 79825 79861)
SLHCSFTERIISILHQPISVSSSPMGKPGGAKTRTAVCLSDGVFFLAGAFMSLTLVWSYF
SIFSPSFTSLRHDGKPVQCSGLDMQFDPSEPGFYDDPDLSYSIEKPITKWDEKRNQWFES
HPSFKPGSENRIVMVTGSQSSPCKNPIGDHLLLRCFKNKVDYARIHGHDIFYSNSLLHPK
MNSYWAKLPVVKAAMLAHPEAEWIWWVDSDAIFTDMEFKPPLHRYRQHNLVVHGWPNIIY
EKQSWTALNAGVFLIRNCQWSMDLIDTWKSMGPVSPDYKKWGPIQRSIFKDKLFPESDDQ
TALIYLLYKHKELYYPKIYLEAEYYLQGYWIGVFGDFANVTERYLEMEREDDTLRRRHAE
KVSERYGAFREERFLKGEFGGRGSRRRAFITHFTGCQPCSGDHNPSYDGDTCWNEMIRAL
NFADNQVMRVYGYVHSDLSKTSPLQPLPFDYPNEAW
GenBank annotation
78652..79950 F19F18.180
BLASTX cluster
78643..79947 cluster 8 4 hits for protein gene
BLASTN cluster
79137..79205 cluster 8 1 hits for EST
79865..79798 cluster 9 1 hits for EST
GENSCAN
77884..79947 gene model 20
Suboptimal exon
78652..79947 Sngl Phase: 0 Score: 0.232
Grail
78594..79006 exon Phase: 2 Score: 72
Shadow exon
79779..79950 exon Phase: 2 Score: 79
Exon-Intron boundary candidatates
Acceptor |
78594 [0.012] (2) |
78606 [0.002] (2) |
78628 [0.94N/0.827] (0) |
78638 [0.367] (1) |
78786 [0.90N/0.250] (2) |
79120 [0.001] (0) |
79157 [0.004] (1) |
79309 [0.002] (0) |
79387 [0.002] (0) |
79466 [0.006] (1) |
79531 [0.004] (0) |
79547 [0.008] (1) |
79562 [0.002] (1) |
79647 [0.021] (2) |
79779 [0.001] (2) |
79858 [0.059] (0) |
Donor |
78687 [1.00N/0.691] (0) |
78703 [0.059] (1) |
78853 [0.005] (1) |
78929 [0.012] (2) |
78981 [0.032] (0) |
79006 [0.022] (1) |
79193 [0.038] (2) |
79398 [0.022] (0) |
79436 [0.74N/0.005] (2) |
79466 [0.032] (2) |
79662 [0.105] (0) |
79678 [0.173] (1) |
79857 [0.019] (0) |
79868 [0.014] (2) |
79894 [0.85N/0.014] (1) |
79946 [0.74N/0.374] (2) |
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