information on F17N18
(28512..29953)
Direction: +
Frame: 3
ORF
28449..29971 (Met: 28752 28782 28920 28959 29058 29353 29408 29411 29834 29130 29141 29167 29175 29252 29305 29316 29327 29365 29397 29453 29488 29547 29705 29722 29733)
LEHACRSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGG
RDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDG
RGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIF
GSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEVRYFFH*LF*IYVYQIW*S
*HIPKDISSIGAEVGDDLGVHIYYV*VGREIEGKSQKPIIRL*IY*EI*NYKIKGDMKFR
*CEICEISIN*ALMMVVCYFIWGLWFIF*KIKFPKCKPD*SSVLNKSSVLFLGLNIKS*I
DDNAGYFVGAYRFIHQRQNDASNHCIQPFWRRSYTENAKVFHLNFISFFL*ILVY*FP*N
QSVFECYRVWCYFRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKE
VFDQTRNTGCEIAQRCI
GenBank annotation
27176..30271 F17N18.100
BLASTX cluster
27505..30268 cluster 6 39 hits for protein gene
BLASTN cluster
None
GENSCAN
27176..30833 gene model 5
27176..30833 gene model 5
Suboptimal exon
28466..28911 Intr Phase: 2 Score: 0.132
28466..28968 Intr Phase: 2 Score: 0.120
28466..29111 Intr Phase: 2 Score: 0.338
Grail
28466..28974 exon Phase: 2 Score: 89
29050..29111 exon Phase: 1 Score: 36
29556..29671 exon Phase: 0 Score: 84
Exon-Intron boundary candidatates
| Acceptor |
| 28466 [0.89N/0.247] (2) |
28481 [0.006] (2) |
28493 [0.001] (2) |
28525 [0.055] (1) |
| 28790 [0.016] (2) |
28831 [0.003] (1) |
28905 [0.001] (0) |
28928 [0.006] (2) |
| 29050 [0.004] (1) |
29174 [0.023] (2) |
29178 [0.261] (0) |
29214 [0.026] (0) |
| 29232 [0.036] (0) |
29255 [0.031] (2) |
29261 [0.139] (2) |
29273 [0.001] (2) |
| 29348 [0.001] (2) |
29364 [0.007] (0) |
29461 [0.001] (1) |
29467 [0.001] (1) |
| 29500 [0.004] (1) |
29516 [0.002] (2) |
29568 [0.94N/0.423] (0) |
29603 [0.004] (2) |
| 29661 [0.002] (0) |
29736 [0.101] (0) |
29744 [0.009] (2) |
29764 [0.108] (1) |
| 29782 [1.00N/0.925] (1) |
29788 [0.621] (1) |
29808 [0.001] (0) |
29875 [0.002] (1) |
| 29880 [0.001] (0) |
| Donor |
| 28479 [0.007] (1) |
28501 [0.005] (2) |
28629 [0.005] (1) |
28692 [0.013] (1) |
| 28702 [0.469] (2) |
28754 [0.038] (0) |
28850 [0.015] (0) |
28855 [0.379] (2) |
| 28899 [0.013] (1) |
28947 [0.005] (1) |
28968 [0.071] (1) |
28974 [0.827] (1) |
| 29111 [1.00N/0.957] (0) |
29142 [0.013] (1) |
29275 [0.88N/0.085] (2) |
29281 [0.040] (2) |
| 29303 [0.81N/0.444] (0) |
29363 [0.745] (0) |
29370 [0.093] (1) |
29649 [0.186] (1) |
| 29671 [0.99N/0.782] (2) |
29742 [0.003] (1) |
29835 [0.008] (1) |
29920 [0.95N/0.545] (2) |
| 29936 [0.008] (0) |
29945 [0.006] (0) |
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