information on F17N18
(28476..29129)
Direction: +
Frame: 3
ORF
28449..29129 (Met: 28752 28782 28920 28959 29058)
LEHACRSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGG
RDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDG
RGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIF
GSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEVRYFFH
GenBank annotation
27176..30271 F17N18.100
BLASTX cluster
27505..30268 cluster 6 39 hits for protein gene
BLASTN cluster
None
GENSCAN
27176..30833 gene model 5
27176..30833 gene model 5
Suboptimal exon
28466..28911 Intr Phase: 2 Score: 0.132
28466..28968 Intr Phase: 2 Score: 0.120
28466..29111 Intr Phase: 2 Score: 0.338
Grail
28466..28974 exon Phase: 2 Score: 89
29050..29111 exon Phase: 1 Score: 36
Exon-Intron boundary candidatates
Acceptor |
28466 [0.89N/0.247] (2) |
28481 [0.006] (2) |
28493 [0.001] (2) |
28525 [0.055] (1) |
28790 [0.016] (2) |
28831 [0.003] (1) |
28905 [0.001] (0) |
28928 [0.006] (2) |
29050 [0.004] (1) |
Donor |
28479 [0.007] (1) |
28501 [0.005] (2) |
28629 [0.005] (1) |
28692 [0.013] (1) |
28702 [0.469] (2) |
28754 [0.038] (0) |
28850 [0.015] (0) |
28855 [0.379] (2) |
28899 [0.013] (1) |
28947 [0.005] (1) |
28968 [0.071] (1) |
28974 [0.827] (1) |
29111 [1.00N/0.957] (0) |
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Entrance