information on F17I23
(125799..129605)
Direction: +
Frame: 3
ORF
125610..129629 (Met: 125625 125844 125901 126004 126171 126215 126298 126343 126547 126571 126767 127076 127088 127153 127159 127358 127602 127714 127723 127756 127783 127878 127908 128376 128686 128734 128806 128954 128957 128996 129163 129271 129543 129567 125904 125933 125959 125967 125981 126034 126174 126236 126634 126642 126650 126661 126684 126848 126859 126876 127091 127180 127209 127223 127285 127335 127379 127504 127551 127568 127588 127704 127709 127852 127980 128105 128137 128175 128195 128272 128406 128672 128827 128937 129017 129166 129216 129224 129340)
RDLIKMKSFTFLILFLFAAQSISVYAGSFHKDVKIHWGDGRGKIHDNQGKLLSLSLDKSS
GSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYVSNM*FLSCFAIS*CSYHLLI*F*CV
A*LRELHGMRLISSFWGT*GHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNP
QRIM*VETPSFVPYIIFMFEDINS*QESFILSSFTVDGIPIREFMNAESRGVPFPTKQPM
RLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVWVNGKSVCPANSQWFTQKL
DSNGQTRMKGVQSKYMVYNYCSDKKRFPRGVPPECS*D*L*HK*YLTLSL*QWFFLSIIF
QFICYQIYACLCKIFFTMNNEFFHSKNLLKHVVTIYVQRYLGIN*NI*LLDG*NGPNFDL
FLNKIEFFPGFVSSLVSSAVGYRYLYFNKRIQREWRREAVRYFSCVERPYPTISSFSIMH
VSM*HIFILLCICASIEVGILFCMLMCGYLVD*KNTLKNII*KFY*NSTVFVRKIISVIG
SVFKV*KYDDYYALLYRFFLD*AKLYECMGGSVWS*RKINKHQNPLCGGEGLRLSQKSEA
VLTNNLNAGLACDIHY*SLFCNSKRVKKTKY*DIYK*SLLLY*TGWMTHVLVQDSTSQFF
LQSKFPKYTLFLFKLKEHFS**MFVMFKVRFKLILRMACFNVKKVMLICKWILLNQFKKV
SYALNVSN*LKAITYFMYFDRVLALIMLLQDSVTFYYTVQTYVVIFTQIK*CFLLGDRLK
PKEIIFDKTISQIKIKIQLWKTCSYFSIPKF*NFAIILVFI*IRTFILVKLNQ*RKVVN*
KKVLKCKYICHSNLYAVGRVYAHV*VKAVLIIISTRDQHVIYECLYTLFSLFCNNKRVMK
LYFIGFNL*TSKRSNEPTRIQPTINNQTHETSFSLSFAISKHYINSCRLTQFFINNTFEI
SIHLQNIYKNEAFLWYKFCVLDYVSLCGTIYACLCG*STKMFRYIGVTAVERCATEMESF
YLSRSTNPLDPVFSPTRSFSMAKPRFK*LVPGNSAGTVTTFYVSHIQSQSSSFNKHILFV
LDY*ILVFMMTLCSLSLRELRGMRLISSS*NLSGHPYTLHTNVYTKGSGDKEQQFHLWFD
PTVNFHTYCITWNPQRIM*ATFDPLYVNFYVLRL*S*RILYFLFSLSVLQLMEFLLESSR
TPSQLEFRSQRSNQ*LYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVWANGK
SSCPANSSWFTQQLDSNGQTRMKGVQSKYMVYNYCNDKRRFPRGVPVECS
GenBank annotation
None
BLASTX cluster
125625..129629 cluster 21 44 hits for protein gene
BLASTN cluster
125622..129742 cluster 20 5 hits for EST
GENSCAN
124040..127979 gene model 29
128592..134460 gene model 30
96443..100527 gene model 22
Suboptimal exon
125625..125891 Init Phase: 0 Score: 0.836
128592..128720 Init Phase: 0 Score: 0.102
128787..128873 Intr Phase: 0 Score: 0.115
129260..129391 Intr Phase: 2 Score: 0.136
129260..129629 Term Phase: 2 Score: 0.188
129440..129558 Intr Phase: 2 Score: 0.246
Grail
125665..125891 exon Phase: 1 Score: 90
125979..126172 exon Phase: 0 Score: 86
128592..128924 exon Phase: 0 Score: 86
129260..129627 exon Phase: 2 Score: 87
Exon-Intron boundary candidatates
| Acceptor |
| 125665 [0.97N/0.947] (1) |
125678 [0.008] (2) |
125689 [0.65N/0.353] (1) |
125693 [0.014] (2) |
| 125797 [0.023] (1) |
125833 [0.007] (1) |
125979 [0.94N/0.518] (0) |
126079 [0.003] (1) |
| 126085 [0.002] (1) |
126264 [0.96N/0.318] (0) |
126291 [0.010] (0) |
126374 [0.007] (2) |
| 126444 [0.022] (0) |
126488 [0.003] (2) |
126755 [0.001] (2) |
126930 [0.495] (0) |
| 126943 [0.003] (1) |
126948 [0.002] (0) |
126960 [0.025] (0) |
126963 [0.017] (0) |
| 126970 [0.085] (1) |
126998 [0.96N/0.020] (2) |
127009 [0.002] (1) |
127133 [0.003] (2) |
| 127238 [0.002] (2) |
127282 [0.001] (1) |
127288 [0.005] (1) |
127405 [0.020] (1) |
| 127526 [0.270] (2) |
127591 [0.020] (1) |
127650 [0.028] (0) |
127692 [0.010] (0) |
| 127712 [0.131] (2) |
127732 [0.246] (1) |
127816 [0.327] (1) |
127900 [0.005] (1) |
| 127921 [0.002] (1) |
127927 [0.008] (1) |
128108 [0.001] (2) |
128198 [0.013] (2) |
| 128416 [0.93N/0.058] (1) |
128675 [0.086] (2) |
128686 [0.001] (1) |
128694 [0.043] (0) |
| 128787 [0.003] (0) |
128796 [0.003] (0) |
128932 [0.002] (1) |
128971 [0.96N/0.655] (1) |
| 128977 [0.004] (1) |
129020 [0.006] (2) |
129071 [0.001] (2) |
129212 [0.003] (2) |
| 129260 [0.96N/0.291] (2) |
129268 [0.96N/0.760] (1) |
129287 [0.179] (2) |
129289 [0.001] (1) |
| 129291 [0.001] (0) |
129297 [0.003] (0) |
129440 [0.003] (2) |
129457 [0.003] (1) |
| 129629 [0.001] (2) |
| Donor |
| 125796 [0.026] (1) |
125859 [0.90N/0.121] (1) |
125891 [1.00N/0.907] (0) |
125895 [0.010] (1) |
| 125902 [0.022] (2) |
126172 [0.95N/0.648] (2) |
126413 [0.005] (0) |
126482 [0.029] (0) |
| 126555 [0.021] (1) |
126562 [0.058] (2) |
126602 [0.013] (0) |
126613 [0.96N/0.004] (2) |
| 126693 [0.008] (1) |
126749 [0.016] (0) |
126929 [0.008] (0) |
126969 [0.025] (1) |
| 127018 [0.005] (2) |
127081 [1.00N/0.479] (2) |
127085 [0.058] (0) |
127134 [0.053] (1) |
| 127150 [0.004] (2) |
127160 [0.003] (0) |
127242 [0.030] (1) |
127281 [0.013] (1) |
| 127426 [0.012] (2) |
127445 [0.034] (0) |
127489 [0.049] (2) |
127524 [0.004] (1) |
| 127616 [0.006] (0) |
127731 [0.110] (1) |
127779 [0.089] (1) |
127892 [0.005] (0) |
| 128318 [0.045] (0) |
128331 [0.005] (1) |
128607 [0.006] (1) |
128720 [0.181] (0) |
| 128819 [0.019] (0) |
128841 [0.90N/0.416] (1) |
128858 [0.018] (0) |
128873 [1.00N/0.814] (0) |
| 129104 [0.006] (0) |
129164 [0.99N/0.586] (0) |
129187 [0.241] (2) |
129191 [0.90N/0.131] (0) |
| 129214 [0.017] (2) |
129391 [0.319] (2) |
129409 [0.011] (2) |
129551 [0.017] (0) |
| 129558 [0.88N/0.680] (1) |
129562 [0.008] (2) |
129598 [0.082] (2) |
129609 [0.021] (1) |
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