BLASTX alignment cluster 23    (99252..99596)

Local alignments in this cluster

gi|4567266|gb|AAD23679.1|AC006841_7[fasta] (AC006841) putative pol polyprotein [Arabidopsis thaliana]
Length 838 aa
position (link: detail on the area) subject position direction score
99264..99593 (66..175) + 42

gi|4539406|emb|CAB40039.1|[fasta] (AL049524) putative retrotransposon [Arabidopsis thaliana]
Length 1230 aa
position (link: detail on the area) subject position direction score
99255..99593 (64..176) + 42

gi|4567277|gb|AAD23690.1|AC006841_18[fasta] (AC006841) putative pol protein with Zn finger CCHC type domain [Arabidopsis thaliana]
Length 1333 aa
position (link: detail on the area) subject position direction score
99255..99593 (66..178) + 147

gi|3687234[fasta] (AC005169) putative copia-like transposable element [Arabidopsis thaliana]
Length 1137 aa
position (link: detail on the area) subject position direction score
99264..99593 (39..148) + 223

gi|4335736|gb|AAD17414|[fasta] (AC006248) putative copia polyprotein [Arabidopsis thaliana]
Length 1166 aa
position (link: detail on the area) subject position direction score
99252..99596 (74..188) + 65

gi|4388818|gb|AAD19773|[fasta] (AC006528) putative pol polyprotein with a Zn-finger CCHC type domain (prosite:QDOC50158) and a DDE integrase signature motif [Arabidopsis thaliana]
Length 1335 aa
position (link: detail on the area) subject position direction score
99264..99575 (44..147) + 49

gi|99721|pir||S05465[fasta] retrovirus-related polyprotein - Arabidopsis thaliana retrotransposon Ta1-3
gi|16534|emb|CAA31653| (X13291) polyprotein [Arabidopsis thaliana]
Length 1291 aa
position (link: detail on the area) subject position direction score
99252..99584 (81..191) + 122

gi|99727|pir||S23313[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Kashmir) (fragment)
gi|1345510|emb|CAA37918| (X53975) orf 1 [Arabidopsis thaliana]
Length 560 aa
position (link: detail on the area) subject position direction score
99264..99584 (73..179) + 107

gi|3402755|emb|CAA20201.1|[fasta] (AL031187) putative transposable element [Arabidopsis thaliana]
Length 1308 aa
position (link: detail on the area) subject position direction score
99264..99584 (79..185) + 66

gi|130582|sp|P10978|POLX_TOBAC[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|100342|pir||S04273 hypothetical protein - common tobacco
gi|20045|emb|CAA32025| (X13777) ORF [Nicotiana tabacum]
Length 1328 aa
position (link: detail on the area) subject position direction score
99270..99581 (56..159) + 101

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