information on F16J13    (41486..42736)

Direction: +

Frame: 2

ORF

    41378..42784  (Met: 41384 41679 41697 41959 42256 42259 42265 42312 42531 42734 41570 41590 41649 41654 41668 41763 41831 42016 42078 42095 42145 42213 42227 42307 42384 42422 42511 42540 42545 42595 42642)
NIMHFCCLQDESNLYIFLELVTQGSLRKLYQRNQLGDSVVSLYTRQILDGLKYLHDKGFI
HRFD*KSLFL*VHVFPKLLISWVVYFFFI**KEH*VQMYWWTLMEQLNLQILDWLRFFSI
NNRCL*FSSTNLVHRLFPLLDTCGILL*NVPLANSVLELDGSRGYCFKILPAVLICQYND
RQTYHTSKEMLYLKLLLKYVPAYIVIQA*SSKIPGYVSFRSLINLKLV*LFLF*YSSYYN
CEYVISDHR*DADVYHFDCTLGYTCTTVFLN*III*RLFLTRRIMMVMELQLIYGALGVL
C*MLTGQIPYSDLEIVSLQDSQTFFI*VSKFPQLSPTI*VKVNEQSIWHSLNLYFSTSDF
VLHLQLF*FYFIFMGF**IKGHNLCKRAGYSLV*LERVSFRKYLIFYR*ARDFILTCLKV
NPEERPTAAELLNHPFVNMPLPSSGSGSVSSLLRG

GenBank annotation

    34974..42787    F16J13.90

BLASTX cluster

    40398..42745    cluster 12    65 hits for protein gene

BLASTN cluster

    42272..42731    cluster 4    1 hits for EST

GENSCAN

    34974..42784    gene model 7

Grail

    41405..41549    exon    Phase: 0    Score: 45
    42581..42758    exon    Phase: 0    Score: 88

Exon-Intron boundary candidatates

Acceptor
41405 [0.93N/0.896] (0) 41448 [0.001] (1) 41563 [0.112] (2) 41593 [0.041] (2)
41596 [0.59N/0.755] (2) 41662 [0.011] (2) 41718 [0.003] (1) 41756 [0.006] (0)
41766 [0.002] (1) 41776 [0.001] (2) 41834 [0.86N/0.653] (0) 42013 [0.276] (2)
42053 [0.004] (0) 42098 [0.003] (0) 42105 [0.582] (1) 42135 [0.013] (1)
42144 [0.357] (1) 42151 [0.017] (2) 42184 [0.009] (2) 42234 [1.00N/0.539] (1)
42252 [0.005] (1) 42277 [0.009] (2) 42327 [0.002] (1) 42425 [0.002] (0)
42545 [0.010] (0) 42557 [0.520] (0) 42581 [1.00N/0.601] (0) 42588 [0.004] (1)
42645 [0.007] (1) 42759 [0.002] (1)
Donor
41549 [0.044] (1) 41562 [0.332] (2) 41734 [1.00N/0.584] (0) 41785 [0.006] (0)
41833 [0.010] (0) 41881 [1.00N/0.846] (0) 42036 [0.91N/0.105] (2) 42052 [0.822] (0)
42074 [0.003] (1) 42143 [0.025] (1) 42158 [0.006] (1) 42233 [0.056] (1)
42321 [0.039] (2) 42350 [1.00N/0.810] (1) 42388 [0.99N/0.170] (0) 42432 [0.024] (2)
42481 [0.091] (0) 42608 [0.411] (1) 42758 [0.88N/0.033] (1)

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